Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16025 and HMPREF1058_RS16020 overlap by 44 nucleotides HMPREF1058_RS16020 and HMPREF1058_RS16015 overlap by 8 nucleotides HMPREF1058_RS16015 and HMPREF1058_RS16010 are separated by 240 nucleotides
HMPREF1058_RS16025: HMPREF1058_RS16025 - DUF3987 domain-containing protein, at 780,594 to 782,471
_RS16025
HMPREF1058_RS16020: HMPREF1058_RS16020 - hypothetical protein, at 782,428 to 783,066
_RS16020
HMPREF1058_RS16015: HMPREF1058_RS16015 - helix-turn-helix domain-containing protein, at 783,059 to 783,436
_RS16015
HMPREF1058_RS16010: HMPREF1058_RS16010 - IS21 family transposase, at 783,677 to 785,242
_RS16010
Position (kb) 783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.141 kb on + strand, within HMPREF1058_RS16025 at 782.142 kb on - strand, within HMPREF1058_RS16025 at 782.142 kb on - strand, within HMPREF1058_RS16025 at 782.142 kb on - strand, within HMPREF1058_RS16025 at 782.174 kb on + strand, within HMPREF1058_RS16025 at 782.206 kb on + strand, within HMPREF1058_RS16025 at 782.270 kb on + strand, within HMPREF1058_RS16025 at 782.315 kb on + strand at 782.319 kb on + strand at 782.320 kb on - strand at 782.355 kb on + strand at 782.402 kb on + strand at 782.499 kb on + strand, within HMPREF1058_RS16020 at 782.499 kb on + strand, within HMPREF1058_RS16020 at 782.500 kb on - strand, within HMPREF1058_RS16020 at 782.588 kb on + strand, within HMPREF1058_RS16020 at 782.686 kb on + strand, within HMPREF1058_RS16020 at 782.763 kb on + strand, within HMPREF1058_RS16020 at 782.763 kb on + strand, within HMPREF1058_RS16020 at 783.044 kb on + strand at 783.048 kb on + strand at 783.049 kb on - strand at 783.062 kb on + strand at 783.062 kb on + strand at 783.062 kb on + strand at 783.108 kb on - strand, within HMPREF1058_RS16015 at 783.111 kb on + strand, within HMPREF1058_RS16015 at 783.111 kb on + strand, within HMPREF1058_RS16015 at 783.111 kb on + strand, within HMPREF1058_RS16015 at 783.112 kb on - strand, within HMPREF1058_RS16015 at 783.290 kb on + strand, within HMPREF1058_RS16015 at 783.323 kb on + strand, within HMPREF1058_RS16015 at 783.324 kb on - strand, within HMPREF1058_RS16015 at 783.472 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 782,141 + HMPREF1058_RS16025 0.82 -0.8 782,141 + HMPREF1058_RS16025 0.82 +0.5 782,141 + HMPREF1058_RS16025 0.82 -0.5 782,141 + HMPREF1058_RS16025 0.82 -0.9 782,141 + HMPREF1058_RS16025 0.82 +0.4 782,141 + HMPREF1058_RS16025 0.82 +0.2 782,141 + HMPREF1058_RS16025 0.82 +0.4 782,142 - HMPREF1058_RS16025 0.82 -1.0 782,142 - HMPREF1058_RS16025 0.82 -0.8 782,142 - HMPREF1058_RS16025 0.82 -0.9 782,174 + HMPREF1058_RS16025 0.84 -0.0 782,206 + HMPREF1058_RS16025 0.86 +0.3 782,270 + HMPREF1058_RS16025 0.89 -2.8 782,315 + +1.0 782,319 + +0.4 782,320 - +0.6 782,355 + -1.0 782,402 + -0.2 782,499 + HMPREF1058_RS16020 0.11 -0.1 782,499 + HMPREF1058_RS16020 0.11 +1.1 782,500 - HMPREF1058_RS16020 0.11 -0.3 782,588 + HMPREF1058_RS16020 0.25 -0.5 782,686 + HMPREF1058_RS16020 0.40 +0.6 782,763 + HMPREF1058_RS16020 0.52 -0.8 782,763 + HMPREF1058_RS16020 0.52 +1.5 783,044 + +2.2 783,048 + -1.1 783,049 - -0.6 783,062 + -1.4 783,062 + +0.2 783,062 + -0.2 783,108 - HMPREF1058_RS16015 0.13 +0.6 783,111 + HMPREF1058_RS16015 0.14 +2.3 783,111 + HMPREF1058_RS16015 0.14 +0.4 783,111 + HMPREF1058_RS16015 0.14 +0.4 783,112 - HMPREF1058_RS16015 0.14 -0.4 783,290 + HMPREF1058_RS16015 0.61 -0.2 783,323 + HMPREF1058_RS16015 0.70 +0.5 783,324 - HMPREF1058_RS16015 0.70 -2.4 783,472 + -0.9
Or see this region's nucleotide sequence