Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15745 and HMPREF1058_RS15740 are separated by 155 nucleotides HMPREF1058_RS15740 and HMPREF1058_RS15735 are separated by 21 nucleotides HMPREF1058_RS15735 and HMPREF1058_RS15730 are separated by 7 nucleotides HMPREF1058_RS15730 and HMPREF1058_RS15725 are separated by 307 nucleotides
HMPREF1058_RS15745: HMPREF1058_RS15745 - hypothetical protein, at 846,395 to 847,036
_RS15745
HMPREF1058_RS15740: HMPREF1058_RS15740 - hypothetical protein, at 847,192 to 847,740
_RS15740
HMPREF1058_RS15735: HMPREF1058_RS15735 - hypothetical protein, at 847,762 to 848,124
_RS15735
HMPREF1058_RS15730: HMPREF1058_RS15730 - RNA polymerase sigma factor, at 848,132 to 848,668
_RS15730
HMPREF1058_RS15725: HMPREF1058_RS15725 - DUF4476 domain-containing protein, at 848,976 to 849,647
_RS15725
Position (kb) 847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.829 kb on - strand, within HMPREF1058_RS15745 at 846.851 kb on + strand, within HMPREF1058_RS15745 at 846.854 kb on + strand, within HMPREF1058_RS15745 at 846.872 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.874 kb on + strand, within HMPREF1058_RS15745 at 846.875 kb on - strand, within HMPREF1058_RS15745 at 846.924 kb on + strand, within HMPREF1058_RS15745 at 846.941 kb on + strand, within HMPREF1058_RS15745 at 846.946 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.957 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.961 kb on + strand, within HMPREF1058_RS15745 at 846.962 kb on - strand, within HMPREF1058_RS15745 at 846.989 kb on + strand at 847.063 kb on + strand at 847.066 kb on + strand at 847.066 kb on + strand at 847.067 kb on - strand at 847.067 kb on - strand at 847.088 kb on - strand at 847.193 kb on + strand at 847.219 kb on - strand at 847.306 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.356 kb on - strand, within HMPREF1058_RS15740 at 847.530 kb on - strand, within HMPREF1058_RS15740 at 847.591 kb on - strand, within HMPREF1058_RS15740 at 847.607 kb on - strand, within HMPREF1058_RS15740 at 847.996 kb on - strand, within HMPREF1058_RS15735 at 848.008 kb on - strand, within HMPREF1058_RS15735 at 848.074 kb on - strand, within HMPREF1058_RS15735 at 848.141 kb on + strand at 848.142 kb on - strand at 848.148 kb on + strand at 848.173 kb on - strand at 848.232 kb on + strand, within HMPREF1058_RS15730 at 848.247 kb on + strand, within HMPREF1058_RS15730 at 848.331 kb on + strand, within HMPREF1058_RS15730 at 848.332 kb on - strand, within HMPREF1058_RS15730 at 848.340 kb on + strand, within HMPREF1058_RS15730 at 848.360 kb on - strand, within HMPREF1058_RS15730 at 848.414 kb on - strand, within HMPREF1058_RS15730 at 848.553 kb on - strand, within HMPREF1058_RS15730 at 848.578 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.611 kb on + strand, within HMPREF1058_RS15730 at 848.639 kb on + strand at 848.640 kb on - strand at 848.781 kb on - strand at 848.874 kb on - strand at 848.880 kb on + strand at 848.905 kb on + strand at 848.929 kb on + strand at 848.932 kb on - strand at 849.002 kb on - strand at 849.017 kb on + strand at 849.018 kb on - strand at 849.047 kb on + strand, within HMPREF1058_RS15725
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 846,829 - HMPREF1058_RS15745 0.68 +0.0 846,829 - HMPREF1058_RS15745 0.68 -0.4 846,851 + HMPREF1058_RS15745 0.71 -1.1 846,854 + HMPREF1058_RS15745 0.71 -0.2 846,872 + HMPREF1058_RS15745 0.74 +0.4 846,874 + HMPREF1058_RS15745 0.75 -0.2 846,874 + HMPREF1058_RS15745 0.75 -0.6 846,875 - HMPREF1058_RS15745 0.75 +0.5 846,924 + HMPREF1058_RS15745 0.82 -1.1 846,941 + HMPREF1058_RS15745 0.85 +0.4 846,946 + HMPREF1058_RS15745 0.86 -0.7 846,957 + HMPREF1058_RS15745 0.88 +0.6 846,957 + HMPREF1058_RS15745 0.88 +3.4 846,961 + HMPREF1058_RS15745 0.88 -3.0 846,961 + HMPREF1058_RS15745 0.88 +0.5 846,962 - HMPREF1058_RS15745 0.88 -0.1 846,989 + +0.4 847,063 + +0.5 847,066 + +0.1 847,066 + +3.0 847,067 - +1.1 847,067 - -0.6 847,088 - +0.7 847,193 + +0.0 847,219 - -0.4 847,306 - HMPREF1058_RS15740 0.21 +0.5 847,356 - HMPREF1058_RS15740 0.30 -0.1 847,356 - HMPREF1058_RS15740 0.30 +1.5 847,530 - HMPREF1058_RS15740 0.62 +1.3 847,591 - HMPREF1058_RS15740 0.73 +1.5 847,607 - HMPREF1058_RS15740 0.76 +1.8 847,996 - HMPREF1058_RS15735 0.64 +0.4 848,008 - HMPREF1058_RS15735 0.68 -0.6 848,074 - HMPREF1058_RS15735 0.86 +2.8 848,141 + +2.1 848,142 - -1.1 848,148 + -0.2 848,173 - +2.8 848,232 + HMPREF1058_RS15730 0.19 +1.3 848,247 + HMPREF1058_RS15730 0.21 +0.4 848,331 + HMPREF1058_RS15730 0.37 -1.8 848,332 - HMPREF1058_RS15730 0.37 +0.8 848,340 + HMPREF1058_RS15730 0.39 -0.7 848,360 - HMPREF1058_RS15730 0.42 +1.2 848,414 - HMPREF1058_RS15730 0.53 -0.3 848,553 - HMPREF1058_RS15730 0.78 -1.9 848,578 - HMPREF1058_RS15730 0.83 -1.1 848,580 - HMPREF1058_RS15730 0.83 -1.4 848,580 - HMPREF1058_RS15730 0.83 -1.3 848,611 + HMPREF1058_RS15730 0.89 +0.6 848,639 + -0.5 848,640 - -0.5 848,781 - -0.5 848,874 - +0.2 848,880 + -0.7 848,905 + -0.7 848,929 + -0.2 848,932 - -1.0 849,002 - +0.1 849,017 + -0.4 849,018 - +0.8 849,047 + HMPREF1058_RS15725 0.11 -0.8
Or see this region's nucleotide sequence