Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15530 and HMPREF1058_RS15525 are separated by 150 nucleotides HMPREF1058_RS15525 and HMPREF1058_RS15520 are separated by 10 nucleotides HMPREF1058_RS15520 and HMPREF1058_RS15515 are separated by 84 nucleotides
HMPREF1058_RS15530: HMPREF1058_RS15530 - diphosphate--fructose-6-phosphate 1-phosphotransferase, at 894,336 to 895,979
_RS15530
HMPREF1058_RS15525: HMPREF1058_RS15525 - hypothetical protein, at 896,130 to 896,378
_RS15525
HMPREF1058_RS15520: HMPREF1058_RS15520 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 896,389 to 896,946
_RS15520
HMPREF1058_RS15515: HMPREF1058_RS15515 - alpha-1,3-galactosidase, at 897,031 to 898,848
_RS15515
Position (kb) 896
897 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 896.258 kb on + strand, within HMPREF1058_RS15525 at 896.260 kb on + strand, within HMPREF1058_RS15525 at 896.260 kb on + strand, within HMPREF1058_RS15525 at 896.401 kb on - strand at 896.470 kb on + strand, within HMPREF1058_RS15520 at 896.471 kb on - strand, within HMPREF1058_RS15520 at 896.538 kb on + strand, within HMPREF1058_RS15520 at 896.591 kb on + strand, within HMPREF1058_RS15520 at 896.667 kb on + strand, within HMPREF1058_RS15520 at 896.756 kb on - strand, within HMPREF1058_RS15520 at 896.837 kb on + strand, within HMPREF1058_RS15520 at 896.888 kb on - strand, within HMPREF1058_RS15520 at 896.890 kb on + strand, within HMPREF1058_RS15520 at 896.911 kb on + strand at 897.022 kb on + strand at 897.023 kb on - strand at 897.023 kb on - strand at 897.023 kb on - strand at 897.028 kb on + strand at 897.032 kb on + strand at 897.033 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.046 kb on - strand at 897.235 kb on - strand, within HMPREF1058_RS15515 at 897.319 kb on - strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515 at 897.348 kb on + strand, within HMPREF1058_RS15515
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 896,258 + HMPREF1058_RS15525 0.51 +0.2 896,260 + HMPREF1058_RS15525 0.52 +0.6 896,260 + HMPREF1058_RS15525 0.52 +0.9 896,401 - -1.4 896,470 + HMPREF1058_RS15520 0.15 -0.4 896,471 - HMPREF1058_RS15520 0.15 -0.9 896,538 + HMPREF1058_RS15520 0.27 -3.8 896,591 + HMPREF1058_RS15520 0.36 -2.1 896,667 + HMPREF1058_RS15520 0.50 -0.2 896,756 - HMPREF1058_RS15520 0.66 +0.1 896,837 + HMPREF1058_RS15520 0.80 -1.3 896,888 - HMPREF1058_RS15520 0.89 +0.3 896,890 + HMPREF1058_RS15520 0.90 -1.4 896,911 + +1.4 897,022 + -0.4 897,023 - -1.1 897,023 - -0.1 897,023 - +1.1 897,028 + +0.5 897,032 + -0.5 897,033 - +0.0 897,046 - +0.0 897,046 - +0.1 897,046 - -0.2 897,046 - -0.6 897,235 - HMPREF1058_RS15515 0.11 +0.6 897,319 - HMPREF1058_RS15515 0.16 +0.5 897,348 + HMPREF1058_RS15515 0.17 +0.8 897,348 + HMPREF1058_RS15515 0.17 +0.6 897,348 + HMPREF1058_RS15515 0.17 -1.9
Or see this region's nucleotide sequence