Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15495

Experiment: Vitafiber 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15500 and HMPREF1058_RS15495 are separated by 258 nucleotidesHMPREF1058_RS15495 and HMPREF1058_RS15490 are separated by 69 nucleotides HMPREF1058_RS15500: HMPREF1058_RS15500 - YgiQ family radical SAM protein, at 902,261 to 904,150 _RS15500 HMPREF1058_RS15495: HMPREF1058_RS15495 - sodium-translocating pyrophosphatase, at 904,409 to 906,613 _RS15495 HMPREF1058_RS15490: HMPREF1058_RS15490 - SWIM zinc finger family protein, at 906,683 to 908,458 _RS15490 Position (kb) 904 905 906 907Strain fitness (log2 ratio) -2 -1 0 1 2 3at 903.419 kb on + strand, within HMPREF1058_RS15500at 903.419 kb on + strand, within HMPREF1058_RS15500at 903.419 kb on + strand, within HMPREF1058_RS15500at 903.420 kb on - strand, within HMPREF1058_RS15500at 903.420 kb on - strand, within HMPREF1058_RS15500at 903.420 kb on - strand, within HMPREF1058_RS15500at 903.485 kb on - strand, within HMPREF1058_RS15500at 903.589 kb on - strand, within HMPREF1058_RS15500at 903.603 kb on + strand, within HMPREF1058_RS15500at 903.640 kb on + strand, within HMPREF1058_RS15500at 903.710 kb on - strand, within HMPREF1058_RS15500at 903.789 kb on + strand, within HMPREF1058_RS15500at 903.794 kb on - strand, within HMPREF1058_RS15500at 903.822 kb on + strand, within HMPREF1058_RS15500at 903.823 kb on - strand, within HMPREF1058_RS15500at 903.827 kb on + strand, within HMPREF1058_RS15500at 903.828 kb on - strand, within HMPREF1058_RS15500at 903.834 kb on + strand, within HMPREF1058_RS15500at 903.918 kb on + strand, within HMPREF1058_RS15500at 903.929 kb on - strand, within HMPREF1058_RS15500at 903.948 kb on + strand, within HMPREF1058_RS15500at 903.949 kb on - strand, within HMPREF1058_RS15500at 903.986 kb on - strandat 903.986 kb on - strandat 904.101 kb on + strandat 904.135 kb on + strandat 904.135 kb on + strandat 904.136 kb on - strandat 904.172 kb on - strandat 904.172 kb on - strandat 904.217 kb on - strandat 904.253 kb on + strandat 904.269 kb on + strandat 904.280 kb on - strandat 904.280 kb on - strandat 904.280 kb on - strandat 904.341 kb on + strandat 904.341 kb on + strandat 904.370 kb on + strandat 904.401 kb on + strandat 904.418 kb on + strandat 904.418 kb on + strandat 904.423 kb on - strandat 904.473 kb on - strandat 904.478 kb on + strandat 904.479 kb on - strandat 904.535 kb on + strandat 904.610 kb on - strandat 904.731 kb on - strand, within HMPREF1058_RS15495at 904.731 kb on - strand, within HMPREF1058_RS15495at 904.731 kb on - strand, within HMPREF1058_RS15495at 904.863 kb on + strand, within HMPREF1058_RS15495at 904.863 kb on + strand, within HMPREF1058_RS15495at 904.863 kb on + strand, within HMPREF1058_RS15495at 904.863 kb on + strand, within HMPREF1058_RS15495at 904.863 kb on + strand, within HMPREF1058_RS15495at 904.915 kb on - strand, within HMPREF1058_RS15495at 904.915 kb on - strand, within HMPREF1058_RS15495at 904.997 kb on + strand, within HMPREF1058_RS15495at 904.998 kb on - strand, within HMPREF1058_RS15495at 905.017 kb on - strand, within HMPREF1058_RS15495at 905.017 kb on - strand, within HMPREF1058_RS15495at 905.035 kb on + strand, within HMPREF1058_RS15495at 905.109 kb on + strand, within HMPREF1058_RS15495at 905.110 kb on - strand, within HMPREF1058_RS15495at 905.110 kb on - strand, within HMPREF1058_RS15495at 905.227 kb on + strand, within HMPREF1058_RS15495at 905.245 kb on + strand, within HMPREF1058_RS15495at 905.246 kb on - strand, within HMPREF1058_RS15495at 905.246 kb on - strand, within HMPREF1058_RS15495at 905.279 kb on - strand, within HMPREF1058_RS15495at 905.457 kb on + strand, within HMPREF1058_RS15495at 905.460 kb on + strand, within HMPREF1058_RS15495at 905.468 kb on - strand, within HMPREF1058_RS15495at 905.492 kb on + strand, within HMPREF1058_RS15495at 905.497 kb on + strand, within HMPREF1058_RS15495at 905.510 kb on + strand, within HMPREF1058_RS15495at 905.510 kb on + strand, within HMPREF1058_RS15495at 905.588 kb on - strand, within HMPREF1058_RS15495at 905.622 kb on + strand, within HMPREF1058_RS15495at 905.675 kb on - strand, within HMPREF1058_RS15495at 905.690 kb on + strand, within HMPREF1058_RS15495at 905.691 kb on - strand, within HMPREF1058_RS15495at 905.927 kb on + strand, within HMPREF1058_RS15495at 905.927 kb on + strand, within HMPREF1058_RS15495at 905.927 kb on + strand, within HMPREF1058_RS15495at 905.928 kb on - strand, within HMPREF1058_RS15495at 905.931 kb on + strand, within HMPREF1058_RS15495at 905.982 kb on + strand, within HMPREF1058_RS15495at 906.000 kb on + strand, within HMPREF1058_RS15495at 906.029 kb on + strand, within HMPREF1058_RS15495at 906.030 kb on - strand, within HMPREF1058_RS15495at 906.038 kb on + strand, within HMPREF1058_RS15495at 906.049 kb on - strand, within HMPREF1058_RS15495at 906.095 kb on - strand, within HMPREF1058_RS15495at 906.274 kb on - strand, within HMPREF1058_RS15495at 906.354 kb on + strand, within HMPREF1058_RS15495at 906.458 kb on - strandat 906.520 kb on + strandat 906.779 kb on + strandat 906.779 kb on + strandat 906.780 kb on - strandat 906.784 kb on + strandat 906.784 kb on + strandat 906.800 kb on + strandat 906.812 kb on - strandat 906.849 kb on + strandat 906.850 kb on - strandat 906.868 kb on + strand, within HMPREF1058_RS15490at 906.870 kb on + strand, within HMPREF1058_RS15490at 906.872 kb on + strand, within HMPREF1058_RS15490at 906.872 kb on + strand, within HMPREF1058_RS15490at 906.873 kb on - strand, within HMPREF1058_RS15490at 906.873 kb on - strand, within HMPREF1058_RS15490at 906.873 kb on - strand, within HMPREF1058_RS15490at 906.875 kb on - strand, within HMPREF1058_RS15490at 906.875 kb on - strand, within HMPREF1058_RS15490at 906.909 kb on + strand, within HMPREF1058_RS15490at 906.910 kb on - strand, within HMPREF1058_RS15490at 906.919 kb on - strand, within HMPREF1058_RS15490at 907.066 kb on + strand, within HMPREF1058_RS15490at 907.067 kb on - strand, within HMPREF1058_RS15490at 907.123 kb on - strand, within HMPREF1058_RS15490at 907.123 kb on - strand, within HMPREF1058_RS15490at 907.172 kb on + strand, within HMPREF1058_RS15490at 907.194 kb on - strand, within HMPREF1058_RS15490at 907.205 kb on - strand, within HMPREF1058_RS15490at 907.407 kb on - strand, within HMPREF1058_RS15490at 907.440 kb on + strand, within HMPREF1058_RS15490at 907.545 kb on - strand, within HMPREF1058_RS15490at 907.574 kb on - strand, within HMPREF1058_RS15490at 907.607 kb on + strand, within HMPREF1058_RS15490

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Per-strain Table

Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C)
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903,419 + HMPREF1058_RS15500 0.61 +1.2
903,419 + HMPREF1058_RS15500 0.61 -1.9
903,419 + HMPREF1058_RS15500 0.61 -0.7
903,420 - HMPREF1058_RS15500 0.61 -1.0
903,420 - HMPREF1058_RS15500 0.61 -0.3
903,420 - HMPREF1058_RS15500 0.61 -2.0
903,485 - HMPREF1058_RS15500 0.65 +0.3
903,589 - HMPREF1058_RS15500 0.70 -0.4
903,603 + HMPREF1058_RS15500 0.71 -0.3
903,640 + HMPREF1058_RS15500 0.73 -0.3
903,710 - HMPREF1058_RS15500 0.77 -0.4
903,789 + HMPREF1058_RS15500 0.81 -0.6
903,794 - HMPREF1058_RS15500 0.81 +0.3
903,822 + HMPREF1058_RS15500 0.83 -0.7
903,823 - HMPREF1058_RS15500 0.83 -2.3
903,827 + HMPREF1058_RS15500 0.83 +1.3
903,828 - HMPREF1058_RS15500 0.83 +1.2
903,834 + HMPREF1058_RS15500 0.83 -1.5
903,918 + HMPREF1058_RS15500 0.88 -0.6
903,929 - HMPREF1058_RS15500 0.88 +0.6
903,948 + HMPREF1058_RS15500 0.89 +0.3
903,949 - HMPREF1058_RS15500 0.89 +1.2
903,986 - +0.2
903,986 - +2.0
904,101 + +0.1
904,135 + +0.4
904,135 + +0.2
904,136 - -0.4
904,172 - -0.3
904,172 - -0.4
904,217 - -0.6
904,253 + +1.1
904,269 + +0.6
904,280 - +0.6
904,280 - +1.3
904,280 - -0.1
904,341 + +0.1
904,341 + -1.6
904,370 + -0.0
904,401 + -1.0
904,418 + +1.0
904,418 + -0.2
904,423 - +0.9
904,473 - +0.7
904,478 + -0.6
904,479 - -0.7
904,535 + +0.9
904,610 - -0.1
904,731 - HMPREF1058_RS15495 0.15 +0.3
904,731 - HMPREF1058_RS15495 0.15 +2.1
904,731 - HMPREF1058_RS15495 0.15 -2.4
904,863 + HMPREF1058_RS15495 0.21 +0.8
904,863 + HMPREF1058_RS15495 0.21 +0.3
904,863 + HMPREF1058_RS15495 0.21 +1.0
904,863 + HMPREF1058_RS15495 0.21 -1.9
904,863 + HMPREF1058_RS15495 0.21 +2.0
904,915 - HMPREF1058_RS15495 0.23 +0.7
904,915 - HMPREF1058_RS15495 0.23 -1.5
904,997 + HMPREF1058_RS15495 0.27 +0.9
904,998 - HMPREF1058_RS15495 0.27 -0.8
905,017 - HMPREF1058_RS15495 0.28 -0.2
905,017 - HMPREF1058_RS15495 0.28 +0.8
905,035 + HMPREF1058_RS15495 0.28 +0.3
905,109 + HMPREF1058_RS15495 0.32 +1.1
905,110 - HMPREF1058_RS15495 0.32 +1.2
905,110 - HMPREF1058_RS15495 0.32 -0.2
905,227 + HMPREF1058_RS15495 0.37 -0.7
905,245 + HMPREF1058_RS15495 0.38 +1.3
905,246 - HMPREF1058_RS15495 0.38 +1.2
905,246 - HMPREF1058_RS15495 0.38 +0.4
905,279 - HMPREF1058_RS15495 0.39 +0.6
905,457 + HMPREF1058_RS15495 0.48 +0.4
905,460 + HMPREF1058_RS15495 0.48 +0.2
905,468 - HMPREF1058_RS15495 0.48 +1.5
905,492 + HMPREF1058_RS15495 0.49 +1.4
905,497 + HMPREF1058_RS15495 0.49 +0.5
905,510 + HMPREF1058_RS15495 0.50 +1.2
905,510 + HMPREF1058_RS15495 0.50 +0.7
905,588 - HMPREF1058_RS15495 0.53 -0.4
905,622 + HMPREF1058_RS15495 0.55 -0.2
905,675 - HMPREF1058_RS15495 0.57 -0.6
905,690 + HMPREF1058_RS15495 0.58 +0.6
905,691 - HMPREF1058_RS15495 0.58 +0.1
905,927 + HMPREF1058_RS15495 0.69 -0.2
905,927 + HMPREF1058_RS15495 0.69 +1.1
905,927 + HMPREF1058_RS15495 0.69 +0.3
905,928 - HMPREF1058_RS15495 0.69 +1.4
905,931 + HMPREF1058_RS15495 0.69 +0.2
905,982 + HMPREF1058_RS15495 0.71 +2.8
906,000 + HMPREF1058_RS15495 0.72 -0.7
906,029 + HMPREF1058_RS15495 0.73 -0.0
906,030 - HMPREF1058_RS15495 0.74 +0.5
906,038 + HMPREF1058_RS15495 0.74 -0.6
906,049 - HMPREF1058_RS15495 0.74 +1.4
906,095 - HMPREF1058_RS15495 0.76 +1.1
906,274 - HMPREF1058_RS15495 0.85 -0.3
906,354 + HMPREF1058_RS15495 0.88 +0.4
906,458 - +1.0
906,520 + -0.2
906,779 + -0.1
906,779 + +0.6
906,780 - -0.8
906,784 + -0.8
906,784 + +0.5
906,800 + -0.3
906,812 - -0.5
906,849 + -0.1
906,850 - -0.5
906,868 + HMPREF1058_RS15490 0.10 -0.1
906,870 + HMPREF1058_RS15490 0.11 +0.3
906,872 + HMPREF1058_RS15490 0.11 -0.4
906,872 + HMPREF1058_RS15490 0.11 +0.1
906,873 - HMPREF1058_RS15490 0.11 -0.7
906,873 - HMPREF1058_RS15490 0.11 -0.5
906,873 - HMPREF1058_RS15490 0.11 -0.6
906,875 - HMPREF1058_RS15490 0.11 -0.4
906,875 - HMPREF1058_RS15490 0.11 -0.7
906,909 + HMPREF1058_RS15490 0.13 -0.7
906,910 - HMPREF1058_RS15490 0.13 +0.1
906,919 - HMPREF1058_RS15490 0.13 -0.8
907,066 + HMPREF1058_RS15490 0.22 -0.9
907,067 - HMPREF1058_RS15490 0.22 -0.0
907,123 - HMPREF1058_RS15490 0.25 +0.4
907,123 - HMPREF1058_RS15490 0.25 +0.5
907,172 + HMPREF1058_RS15490 0.28 +0.6
907,194 - HMPREF1058_RS15490 0.29 -0.5
907,205 - HMPREF1058_RS15490 0.29 +0.5
907,407 - HMPREF1058_RS15490 0.41 +0.6
907,440 + HMPREF1058_RS15490 0.43 -0.5
907,545 - HMPREF1058_RS15490 0.49 -0.0
907,574 - HMPREF1058_RS15490 0.50 +0.3
907,607 + HMPREF1058_RS15490 0.52 -0.3

Or see this region's nucleotide sequence