Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15340 and HMPREF1058_RS15335 are separated by 142 nucleotides HMPREF1058_RS15335 and HMPREF1058_RS15330 are separated by 35 nucleotides HMPREF1058_RS15330 and HMPREF1058_RS15325 are separated by 399 nucleotides
HMPREF1058_RS15340: HMPREF1058_RS15340 - OmpA family protein, at 945,013 to 946,149
_RS15340
HMPREF1058_RS15335: HMPREF1058_RS15335 - hypothetical protein, at 946,292 to 946,951
_RS15335
HMPREF1058_RS15330: HMPREF1058_RS15330 - helix-turn-helix transcriptional regulator, at 946,987 to 947,835
_RS15330
HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816
_RS15325
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 946.126 kb on + strand at 946.126 kb on + strand at 946.127 kb on - strand at 946.198 kb on + strand at 946.199 kb on - strand at 946.200 kb on + strand at 946.201 kb on - strand at 946.289 kb on - strand at 946.342 kb on + strand at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.365 kb on + strand, within HMPREF1058_RS15335 at 946.434 kb on - strand, within HMPREF1058_RS15335 at 946.443 kb on - strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.465 kb on + strand, within HMPREF1058_RS15335 at 946.580 kb on + strand, within HMPREF1058_RS15335 at 946.651 kb on + strand, within HMPREF1058_RS15335 at 946.652 kb on - strand, within HMPREF1058_RS15335 at 946.653 kb on + strand, within HMPREF1058_RS15335 at 946.654 kb on - strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.655 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.732 kb on + strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.733 kb on - strand, within HMPREF1058_RS15335 at 946.783 kb on + strand, within HMPREF1058_RS15335 at 946.784 kb on - strand, within HMPREF1058_RS15335 at 946.788 kb on - strand, within HMPREF1058_RS15335 at 946.879 kb on + strand, within HMPREF1058_RS15335 at 946.880 kb on - strand, within HMPREF1058_RS15335 at 946.941 kb on - strand at 946.944 kb on + strand at 946.989 kb on - strand at 947.045 kb on + strand at 947.105 kb on - strand, within HMPREF1058_RS15330 at 947.226 kb on - strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.394 kb on + strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.395 kb on - strand, within HMPREF1058_RS15330 at 947.401 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.408 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.540 kb on - strand, within HMPREF1058_RS15330 at 947.572 kb on - strand, within HMPREF1058_RS15330 at 947.658 kb on + strand, within HMPREF1058_RS15330 at 947.721 kb on + strand, within HMPREF1058_RS15330 at 947.737 kb on + strand, within HMPREF1058_RS15330 at 947.738 kb on - strand, within HMPREF1058_RS15330 at 947.766 kb on + strand at 947.871 kb on + strand at 947.871 kb on + strand at 947.872 kb on - strand at 947.961 kb on + strand at 947.962 kb on - strand at 947.976 kb on + strand at 947.995 kb on + strand at 947.996 kb on - strand at 948.036 kb on + strand at 948.037 kb on - strand at 948.047 kb on - strand at 948.068 kb on - strand at 948.124 kb on - strand at 948.128 kb on - strand at 948.139 kb on - strand at 948.139 kb on - strand at 948.140 kb on + strand at 948.140 kb on + strand at 948.230 kb on - strand at 948.331 kb on - strand at 948.521 kb on + strand at 948.522 kb on - strand at 948.701 kb on + strand, within HMPREF1058_RS15325 at 948.701 kb on + strand, within HMPREF1058_RS15325
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 946,126 + -0.2 946,126 + -2.6 946,127 - +0.4 946,198 + -0.2 946,199 - +0.4 946,200 + -0.8 946,201 - -0.8 946,289 - -1.0 946,342 + -0.5 946,365 + HMPREF1058_RS15335 0.11 +0.2 946,365 + HMPREF1058_RS15335 0.11 +1.2 946,434 - HMPREF1058_RS15335 0.22 +0.2 946,443 - HMPREF1058_RS15335 0.23 -0.5 946,465 + HMPREF1058_RS15335 0.26 -0.1 946,465 + HMPREF1058_RS15335 0.26 -0.2 946,580 + HMPREF1058_RS15335 0.44 +0.5 946,651 + HMPREF1058_RS15335 0.54 +0.8 946,652 - HMPREF1058_RS15335 0.55 +0.6 946,653 + HMPREF1058_RS15335 0.55 -0.2 946,654 - HMPREF1058_RS15335 0.55 -1.8 946,655 + HMPREF1058_RS15335 0.55 -0.5 946,655 + HMPREF1058_RS15335 0.55 -1.0 946,732 + HMPREF1058_RS15335 0.67 -0.7 946,732 + HMPREF1058_RS15335 0.67 -0.8 946,732 + HMPREF1058_RS15335 0.67 -1.8 946,733 - HMPREF1058_RS15335 0.67 -0.2 946,733 - HMPREF1058_RS15335 0.67 +0.3 946,783 + HMPREF1058_RS15335 0.74 -0.4 946,784 - HMPREF1058_RS15335 0.75 +0.0 946,788 - HMPREF1058_RS15335 0.75 -0.2 946,879 + HMPREF1058_RS15335 0.89 -1.2 946,880 - HMPREF1058_RS15335 0.89 +1.4 946,941 - -0.7 946,944 + +0.3 946,989 - +2.7 947,045 + -0.4 947,105 - HMPREF1058_RS15330 0.14 +4.4 947,226 - HMPREF1058_RS15330 0.28 +4.3 947,394 + HMPREF1058_RS15330 0.48 -0.2 947,394 + HMPREF1058_RS15330 0.48 -0.8 947,395 - HMPREF1058_RS15330 0.48 +3.1 947,395 - HMPREF1058_RS15330 0.48 +3.3 947,401 - HMPREF1058_RS15330 0.49 +3.9 947,408 - HMPREF1058_RS15330 0.50 +4.3 947,408 - HMPREF1058_RS15330 0.50 +4.2 947,540 - HMPREF1058_RS15330 0.65 +5.9 947,540 - HMPREF1058_RS15330 0.65 +5.0 947,540 - HMPREF1058_RS15330 0.65 +3.8 947,572 - HMPREF1058_RS15330 0.69 +4.2 947,658 + HMPREF1058_RS15330 0.79 +0.2 947,721 + HMPREF1058_RS15330 0.86 -0.5 947,737 + HMPREF1058_RS15330 0.88 +1.4 947,738 - HMPREF1058_RS15330 0.88 +4.1 947,766 + +0.2 947,871 + +0.2 947,871 + +2.4 947,872 - +2.6 947,961 + +0.3 947,962 - +3.5 947,976 + +0.9 947,995 + -0.7 947,996 - +4.8 948,036 + -1.1 948,037 - +3.8 948,047 - +2.3 948,068 - +3.1 948,124 - +3.6 948,128 - +4.5 948,139 - +3.3 948,139 - +0.7 948,140 + +0.3 948,140 + -0.2 948,230 - +4.4 948,331 - +3.2 948,521 + -0.6 948,522 - +4.5 948,701 + HMPREF1058_RS15325 0.13 -0.2 948,701 + HMPREF1058_RS15325 0.13 -1.6
Or see this region's nucleotide sequence