Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15325

Experiment: Vitafiber 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15330 and HMPREF1058_RS15325 are separated by 399 nucleotidesHMPREF1058_RS15325 and HMPREF1058_RS15320 are separated by 57 nucleotides HMPREF1058_RS15330: HMPREF1058_RS15330 - helix-turn-helix transcriptional regulator, at 946,987 to 947,835 _RS15330 HMPREF1058_RS15325: HMPREF1058_RS15325 - BACON domain-containing protein, at 948,235 to 951,816 _RS15325 HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127 _RS15320 Position (kb) 948 949 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 947.394 kb on + strand, within HMPREF1058_RS15330at 947.394 kb on + strand, within HMPREF1058_RS15330at 947.395 kb on - strand, within HMPREF1058_RS15330at 947.395 kb on - strand, within HMPREF1058_RS15330at 947.401 kb on - strand, within HMPREF1058_RS15330at 947.408 kb on - strand, within HMPREF1058_RS15330at 947.408 kb on - strand, within HMPREF1058_RS15330at 947.540 kb on - strand, within HMPREF1058_RS15330at 947.540 kb on - strand, within HMPREF1058_RS15330at 947.540 kb on - strand, within HMPREF1058_RS15330at 947.572 kb on - strand, within HMPREF1058_RS15330at 947.658 kb on + strand, within HMPREF1058_RS15330at 947.721 kb on + strand, within HMPREF1058_RS15330at 947.737 kb on + strand, within HMPREF1058_RS15330at 947.738 kb on - strand, within HMPREF1058_RS15330at 947.766 kb on + strandat 947.871 kb on + strandat 947.871 kb on + strandat 947.872 kb on - strandat 947.961 kb on + strandat 947.962 kb on - strandat 947.976 kb on + strandat 947.995 kb on + strandat 947.996 kb on - strandat 948.036 kb on + strandat 948.037 kb on - strandat 948.047 kb on - strandat 948.068 kb on - strandat 948.124 kb on - strandat 948.128 kb on - strandat 948.139 kb on - strandat 948.139 kb on - strandat 948.140 kb on + strandat 948.140 kb on + strandat 948.230 kb on - strandat 948.331 kb on - strandat 948.521 kb on + strandat 948.522 kb on - strandat 948.701 kb on + strand, within HMPREF1058_RS15325at 948.701 kb on + strand, within HMPREF1058_RS15325at 948.959 kb on + strandat 948.960 kb on - strand, within HMPREF1058_RS15325at 948.960 kb on - strand, within HMPREF1058_RS15325at 949.132 kb on + strand, within HMPREF1058_RS15325at 949.169 kb on + strand, within HMPREF1058_RS15325at 949.170 kb on - strand, within HMPREF1058_RS15325at 949.173 kb on + strand, within HMPREF1058_RS15325at 949.174 kb on - strand, within HMPREF1058_RS15325at 949.174 kb on - strand, within HMPREF1058_RS15325at 949.175 kb on + strand, within HMPREF1058_RS15325at 949.232 kb on - strand, within HMPREF1058_RS15325at 949.318 kb on - strand, within HMPREF1058_RS15325at 949.329 kb on + strand, within HMPREF1058_RS15325at 949.384 kb on - strand, within HMPREF1058_RS15325at 949.386 kb on + strand, within HMPREF1058_RS15325at 949.386 kb on + strand, within HMPREF1058_RS15325at 949.387 kb on - strand, within HMPREF1058_RS15325at 949.387 kb on - strand, within HMPREF1058_RS15325at 949.398 kb on - strand, within HMPREF1058_RS15325at 949.453 kb on - strand, within HMPREF1058_RS15325at 949.458 kb on + strand, within HMPREF1058_RS15325at 949.459 kb on - strand, within HMPREF1058_RS15325at 949.460 kb on + strand, within HMPREF1058_RS15325at 949.464 kb on + strand, within HMPREF1058_RS15325at 949.465 kb on - strand, within HMPREF1058_RS15325at 949.601 kb on - strand, within HMPREF1058_RS15325at 949.643 kb on + strand, within HMPREF1058_RS15325at 949.643 kb on + strand, within HMPREF1058_RS15325at 949.644 kb on - strand, within HMPREF1058_RS15325at 949.653 kb on + strand, within HMPREF1058_RS15325at 949.736 kb on + strand, within HMPREF1058_RS15325at 949.737 kb on - strand, within HMPREF1058_RS15325at 949.737 kb on - strand, within HMPREF1058_RS15325at 949.739 kb on + strand, within HMPREF1058_RS15325at 949.740 kb on - strand, within HMPREF1058_RS15325at 949.740 kb on - strand, within HMPREF1058_RS15325at 949.766 kb on + strand, within HMPREF1058_RS15325at 949.770 kb on + strand, within HMPREF1058_RS15325at 949.770 kb on + strand, within HMPREF1058_RS15325at 949.771 kb on - strand, within HMPREF1058_RS15325at 949.830 kb on + strand, within HMPREF1058_RS15325at 949.831 kb on - strand, within HMPREF1058_RS15325at 949.904 kb on + strandat 950.006 kb on - strand, within HMPREF1058_RS15325at 950.006 kb on - strand, within HMPREF1058_RS15325at 950.011 kb on - strand, within HMPREF1058_RS15325at 950.073 kb on - strand, within HMPREF1058_RS15325at 950.420 kb on - strand, within HMPREF1058_RS15325at 950.424 kb on + strand, within HMPREF1058_RS15325at 950.424 kb on + strand, within HMPREF1058_RS15325at 950.425 kb on - strand, within HMPREF1058_RS15325at 950.425 kb on - strand, within HMPREF1058_RS15325at 950.425 kb on - strand, within HMPREF1058_RS15325at 950.550 kb on + strand, within HMPREF1058_RS15325at 950.550 kb on + strand, within HMPREF1058_RS15325at 950.550 kb on + strand, within HMPREF1058_RS15325at 950.551 kb on - strand, within HMPREF1058_RS15325at 950.551 kb on - strand, within HMPREF1058_RS15325at 950.552 kb on + strand, within HMPREF1058_RS15325at 950.552 kb on + strand, within HMPREF1058_RS15325at 950.553 kb on - strand, within HMPREF1058_RS15325at 950.553 kb on - strand, within HMPREF1058_RS15325at 950.553 kb on - strand, within HMPREF1058_RS15325at 950.553 kb on - strand, within HMPREF1058_RS15325at 950.564 kb on + strand, within HMPREF1058_RS15325at 950.565 kb on - strand, within HMPREF1058_RS15325at 950.569 kb on + strand, within HMPREF1058_RS15325at 950.570 kb on - strand, within HMPREF1058_RS15325at 950.721 kb on - strand, within HMPREF1058_RS15325at 950.726 kb on + strand, within HMPREF1058_RS15325at 950.727 kb on - strand, within HMPREF1058_RS15325at 950.727 kb on - strand, within HMPREF1058_RS15325at 950.830 kb on - strand, within HMPREF1058_RS15325at 950.859 kb on + strand, within HMPREF1058_RS15325at 950.860 kb on - strand, within HMPREF1058_RS15325at 950.931 kb on - strand, within HMPREF1058_RS15325at 950.933 kb on - strand, within HMPREF1058_RS15325at 950.976 kb on + strand, within HMPREF1058_RS15325at 951.015 kb on + strand, within HMPREF1058_RS15325at 951.016 kb on - strand, within HMPREF1058_RS15325at 951.016 kb on - strand, within HMPREF1058_RS15325at 951.037 kb on - strand, within HMPREF1058_RS15325at 951.054 kb on - strand, within HMPREF1058_RS15325at 951.096 kb on + strand, within HMPREF1058_RS15325at 951.100 kb on - strand, within HMPREF1058_RS15325at 951.101 kb on + strand, within HMPREF1058_RS15325at 951.115 kb on - strand, within HMPREF1058_RS15325at 951.228 kb on - strand, within HMPREF1058_RS15325at 951.402 kb on + strand, within HMPREF1058_RS15325at 951.578 kb on - strandat 951.582 kb on + strandat 951.772 kb on + strandat 951.773 kb on - strandat 951.801 kb on - strandat 951.816 kb on + strandat 951.820 kb on + strandat 951.821 kb on - strandat 951.825 kb on - strandat 951.867 kb on - strandat 951.867 kb on - strandat 951.872 kb on - strandat 951.927 kb on - strandat 952.003 kb on - strand, within HMPREF1058_RS15320at 952.133 kb on - strand, within HMPREF1058_RS15320at 952.136 kb on + strand, within HMPREF1058_RS15320at 952.136 kb on + strand, within HMPREF1058_RS15320at 952.142 kb on + strand, within HMPREF1058_RS15320at 952.143 kb on - strand, within HMPREF1058_RS15320at 952.300 kb on - strand, within HMPREF1058_RS15320at 952.464 kb on + strand, within HMPREF1058_RS15320at 952.465 kb on - strand, within HMPREF1058_RS15320at 952.501 kb on - strand, within HMPREF1058_RS15320at 952.698 kb on - strand, within HMPREF1058_RS15320at 952.730 kb on - strand, within HMPREF1058_RS15320at 952.730 kb on - strand, within HMPREF1058_RS15320at 952.760 kb on - strand, within HMPREF1058_RS15320at 952.760 kb on - strand, within HMPREF1058_RS15320at 952.795 kb on - strand, within HMPREF1058_RS15320

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Per-strain Table

Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C)
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947,394 + HMPREF1058_RS15330 0.48 -0.2
947,394 + HMPREF1058_RS15330 0.48 -0.8
947,395 - HMPREF1058_RS15330 0.48 +3.1
947,395 - HMPREF1058_RS15330 0.48 +3.3
947,401 - HMPREF1058_RS15330 0.49 +3.9
947,408 - HMPREF1058_RS15330 0.50 +4.3
947,408 - HMPREF1058_RS15330 0.50 +4.2
947,540 - HMPREF1058_RS15330 0.65 +5.9
947,540 - HMPREF1058_RS15330 0.65 +5.0
947,540 - HMPREF1058_RS15330 0.65 +3.8
947,572 - HMPREF1058_RS15330 0.69 +4.2
947,658 + HMPREF1058_RS15330 0.79 +0.2
947,721 + HMPREF1058_RS15330 0.86 -0.5
947,737 + HMPREF1058_RS15330 0.88 +1.4
947,738 - HMPREF1058_RS15330 0.88 +4.1
947,766 + +0.2
947,871 + +0.2
947,871 + +2.4
947,872 - +2.6
947,961 + +0.3
947,962 - +3.5
947,976 + +0.9
947,995 + -0.7
947,996 - +4.8
948,036 + -1.1
948,037 - +3.8
948,047 - +2.3
948,068 - +3.1
948,124 - +3.6
948,128 - +4.5
948,139 - +3.3
948,139 - +0.7
948,140 + +0.3
948,140 + -0.2
948,230 - +4.4
948,331 - +3.2
948,521 + -0.6
948,522 - +4.5
948,701 + HMPREF1058_RS15325 0.13 -0.2
948,701 + HMPREF1058_RS15325 0.13 -1.6
948,959 + -0.1
948,960 - HMPREF1058_RS15325 0.20 +2.9
948,960 - HMPREF1058_RS15325 0.20 +2.1
949,132 + HMPREF1058_RS15325 0.25 -0.3
949,169 + HMPREF1058_RS15325 0.26 +0.7
949,170 - HMPREF1058_RS15325 0.26 +2.3
949,173 + HMPREF1058_RS15325 0.26 -1.9
949,174 - HMPREF1058_RS15325 0.26 +1.6
949,174 - HMPREF1058_RS15325 0.26 +1.4
949,175 + HMPREF1058_RS15325 0.26 -0.9
949,232 - HMPREF1058_RS15325 0.28 +1.2
949,318 - HMPREF1058_RS15325 0.30 +2.7
949,329 + HMPREF1058_RS15325 0.31 -0.2
949,384 - HMPREF1058_RS15325 0.32 +0.6
949,386 + HMPREF1058_RS15325 0.32 +0.4
949,386 + HMPREF1058_RS15325 0.32 -0.1
949,387 - HMPREF1058_RS15325 0.32 +2.0
949,387 - HMPREF1058_RS15325 0.32 +2.0
949,398 - HMPREF1058_RS15325 0.32 +2.9
949,453 - HMPREF1058_RS15325 0.34 +2.4
949,458 + HMPREF1058_RS15325 0.34 -0.6
949,459 - HMPREF1058_RS15325 0.34 +2.9
949,460 + HMPREF1058_RS15325 0.34 -0.1
949,464 + HMPREF1058_RS15325 0.34 -1.7
949,465 - HMPREF1058_RS15325 0.34 +1.8
949,601 - HMPREF1058_RS15325 0.38 +1.2
949,643 + HMPREF1058_RS15325 0.39 +1.2
949,643 + HMPREF1058_RS15325 0.39 -0.0
949,644 - HMPREF1058_RS15325 0.39 +1.7
949,653 + HMPREF1058_RS15325 0.40 -0.3
949,736 + HMPREF1058_RS15325 0.42 -0.5
949,737 - HMPREF1058_RS15325 0.42 +1.1
949,737 - HMPREF1058_RS15325 0.42 +2.8
949,739 + HMPREF1058_RS15325 0.42 -0.7
949,740 - HMPREF1058_RS15325 0.42 +1.5
949,740 - HMPREF1058_RS15325 0.42 +0.5
949,766 + HMPREF1058_RS15325 0.43 -1.4
949,770 + HMPREF1058_RS15325 0.43 -1.2
949,770 + HMPREF1058_RS15325 0.43 -0.5
949,771 - HMPREF1058_RS15325 0.43 +1.5
949,830 + HMPREF1058_RS15325 0.45 -0.1
949,831 - HMPREF1058_RS15325 0.45 +2.2
949,904 + -0.7
950,006 - HMPREF1058_RS15325 0.49 +1.1
950,006 - HMPREF1058_RS15325 0.49 +1.4
950,011 - HMPREF1058_RS15325 0.50 +2.4
950,073 - HMPREF1058_RS15325 0.51 +0.9
950,420 - HMPREF1058_RS15325 0.61 +0.4
950,424 + HMPREF1058_RS15325 0.61 -0.0
950,424 + HMPREF1058_RS15325 0.61 -0.4
950,425 - HMPREF1058_RS15325 0.61 +1.5
950,425 - HMPREF1058_RS15325 0.61 -0.2
950,425 - HMPREF1058_RS15325 0.61 +0.4
950,550 + HMPREF1058_RS15325 0.65 +0.2
950,550 + HMPREF1058_RS15325 0.65 -1.1
950,550 + HMPREF1058_RS15325 0.65 +0.4
950,551 - HMPREF1058_RS15325 0.65 +1.3
950,551 - HMPREF1058_RS15325 0.65 -0.3
950,552 + HMPREF1058_RS15325 0.65 +0.6
950,552 + HMPREF1058_RS15325 0.65 +0.7
950,553 - HMPREF1058_RS15325 0.65 +1.4
950,553 - HMPREF1058_RS15325 0.65 -0.2
950,553 - HMPREF1058_RS15325 0.65 +0.1
950,553 - HMPREF1058_RS15325 0.65 -0.5
950,564 + HMPREF1058_RS15325 0.65 +0.6
950,565 - HMPREF1058_RS15325 0.65 +1.3
950,569 + HMPREF1058_RS15325 0.65 +1.2
950,570 - HMPREF1058_RS15325 0.65 +0.8
950,721 - HMPREF1058_RS15325 0.69 +0.1
950,726 + HMPREF1058_RS15325 0.70 -0.4
950,727 - HMPREF1058_RS15325 0.70 -0.3
950,727 - HMPREF1058_RS15325 0.70 -0.3
950,830 - HMPREF1058_RS15325 0.72 +2.7
950,859 + HMPREF1058_RS15325 0.73 +0.4
950,860 - HMPREF1058_RS15325 0.73 -0.4
950,931 - HMPREF1058_RS15325 0.75 -1.4
950,933 - HMPREF1058_RS15325 0.75 -0.1
950,976 + HMPREF1058_RS15325 0.77 +0.1
951,015 + HMPREF1058_RS15325 0.78 -0.3
951,016 - HMPREF1058_RS15325 0.78 +0.0
951,016 - HMPREF1058_RS15325 0.78 -0.1
951,037 - HMPREF1058_RS15325 0.78 -1.1
951,054 - HMPREF1058_RS15325 0.79 -0.5
951,096 + HMPREF1058_RS15325 0.80 +0.3
951,100 - HMPREF1058_RS15325 0.80 +0.3
951,101 + HMPREF1058_RS15325 0.80 -2.5
951,115 - HMPREF1058_RS15325 0.80 -0.2
951,228 - HMPREF1058_RS15325 0.84 -0.6
951,402 + HMPREF1058_RS15325 0.88 -1.0
951,578 - +1.0
951,582 + -0.7
951,772 + -0.9
951,773 - -2.4
951,801 - -0.0
951,816 + -1.3
951,820 + +0.6
951,821 - +0.4
951,825 - +0.0
951,867 - +4.5
951,867 - +1.7
951,872 - +4.3
951,927 - +2.1
952,003 - HMPREF1058_RS15320 0.10 +4.2
952,133 - HMPREF1058_RS15320 0.21 +2.7
952,136 + HMPREF1058_RS15320 0.21 +1.4
952,136 + HMPREF1058_RS15320 0.21 -0.3
952,142 + HMPREF1058_RS15320 0.21 -2.4
952,143 - HMPREF1058_RS15320 0.21 +2.6
952,300 - HMPREF1058_RS15320 0.34 +2.9
952,464 + HMPREF1058_RS15320 0.47 +0.3
952,465 - HMPREF1058_RS15320 0.47 +3.9
952,501 - HMPREF1058_RS15320 0.50 +2.6
952,698 - HMPREF1058_RS15320 0.66 +3.5
952,730 - HMPREF1058_RS15320 0.68 +3.3
952,730 - HMPREF1058_RS15320 0.68 +3.8
952,760 - HMPREF1058_RS15320 0.71 +3.1
952,760 - HMPREF1058_RS15320 0.71 +4.4
952,795 - HMPREF1058_RS15320 0.73 -0.1

Or see this region's nucleotide sequence