Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15320 and HMPREF1058_RS15315 are separated by 81 nucleotides HMPREF1058_RS15315 and HMPREF1058_RS15310 are separated by 145 nucleotides
HMPREF1058_RS15320: HMPREF1058_RS15320 - hypothetical protein, at 951,874 to 953,127
_RS15320
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
HMPREF1058_RS15310: HMPREF1058_RS15310 - Mfa1 family fimbria major subunit, at 954,323 to 955,858
_RS15310
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 952.300 kb on - strand, within HMPREF1058_RS15320 at 952.464 kb on + strand, within HMPREF1058_RS15320 at 952.465 kb on - strand, within HMPREF1058_RS15320 at 952.501 kb on - strand, within HMPREF1058_RS15320 at 952.698 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.730 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.760 kb on - strand, within HMPREF1058_RS15320 at 952.795 kb on - strand, within HMPREF1058_RS15320 at 952.829 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.922 kb on + strand, within HMPREF1058_RS15320 at 952.923 kb on - strand, within HMPREF1058_RS15320 at 952.977 kb on + strand, within HMPREF1058_RS15320 at 953.074 kb on + strand at 953.075 kb on - strand at 953.121 kb on - strand at 953.149 kb on - strand at 953.166 kb on - strand at 953.168 kb on + strand at 953.195 kb on - strand at 953.267 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand at 954.155 kb on + strand at 954.155 kb on + strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.184 kb on + strand at 954.204 kb on + strand at 954.222 kb on + strand at 954.276 kb on + strand at 954.277 kb on - strand at 954.280 kb on + strand at 954.288 kb on + strand at 954.290 kb on + strand at 954.325 kb on - strand at 954.325 kb on - strand at 954.387 kb on + strand at 954.388 kb on - strand at 954.528 kb on + strand, within HMPREF1058_RS15310 at 954.529 kb on - strand, within HMPREF1058_RS15310 at 954.533 kb on - strand, within HMPREF1058_RS15310 at 954.538 kb on + strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.634 kb on + strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.636 kb on + strand, within HMPREF1058_RS15310 at 954.690 kb on + strand, within HMPREF1058_RS15310 at 954.694 kb on + strand, within HMPREF1058_RS15310 at 954.717 kb on + strand, within HMPREF1058_RS15310 at 954.737 kb on - strand, within HMPREF1058_RS15310 at 954.739 kb on - strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.834 kb on + strand, within HMPREF1058_RS15310 at 954.862 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 955.063 kb on + strand, within HMPREF1058_RS15310 at 955.064 kb on - strand, within HMPREF1058_RS15310 at 955.096 kb on - strand, within HMPREF1058_RS15310 at 955.121 kb on - strand, within HMPREF1058_RS15310 at 955.149 kb on + strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 952,300 - HMPREF1058_RS15320 0.34 +2.9 952,464 + HMPREF1058_RS15320 0.47 +0.3 952,465 - HMPREF1058_RS15320 0.47 +3.9 952,501 - HMPREF1058_RS15320 0.50 +2.6 952,698 - HMPREF1058_RS15320 0.66 +3.5 952,730 - HMPREF1058_RS15320 0.68 +3.3 952,730 - HMPREF1058_RS15320 0.68 +3.8 952,760 - HMPREF1058_RS15320 0.71 +3.1 952,760 - HMPREF1058_RS15320 0.71 +4.4 952,795 - HMPREF1058_RS15320 0.73 -0.1 952,829 + HMPREF1058_RS15320 0.76 -0.1 952,922 + HMPREF1058_RS15320 0.84 +0.0 952,922 + HMPREF1058_RS15320 0.84 -0.4 952,923 - HMPREF1058_RS15320 0.84 +3.4 952,977 + HMPREF1058_RS15320 0.88 +0.4 953,074 + -0.4 953,075 - +3.4 953,121 - +2.7 953,149 - +4.4 953,166 - +2.8 953,168 + +0.0 953,195 - +1.7 953,267 - +1.5 953,434 + HMPREF1058_RS15315 0.23 +0.4 953,556 + HMPREF1058_RS15315 0.36 -1.7 953,565 - HMPREF1058_RS15315 0.37 +3.8 953,627 - HMPREF1058_RS15315 0.43 +3.0 953,744 + HMPREF1058_RS15315 0.55 +0.4 953,744 + HMPREF1058_RS15315 0.55 +2.5 953,846 + HMPREF1058_RS15315 0.66 -2.7 954,112 - +3.2 954,112 - +4.0 954,118 + -0.4 954,119 - +2.9 954,119 - +1.7 954,155 + -0.2 954,155 + +1.6 954,156 - +2.5 954,156 - +2.9 954,156 - +3.1 954,184 + -0.3 954,204 + +0.1 954,222 + +0.4 954,276 + +0.0 954,277 - +2.7 954,280 + +0.9 954,288 + -1.5 954,290 + +0.3 954,325 - +2.4 954,325 - +4.0 954,387 + -1.6 954,388 - +3.4 954,528 + HMPREF1058_RS15310 0.13 +0.6 954,529 - HMPREF1058_RS15310 0.13 +3.4 954,533 - HMPREF1058_RS15310 0.14 +3.9 954,538 + HMPREF1058_RS15310 0.14 -0.2 954,631 - HMPREF1058_RS15310 0.20 +2.8 954,631 - HMPREF1058_RS15310 0.20 +3.2 954,634 + HMPREF1058_RS15310 0.20 +0.1 954,635 - HMPREF1058_RS15310 0.20 +3.2 954,635 - HMPREF1058_RS15310 0.20 +3.6 954,635 - HMPREF1058_RS15310 0.20 +4.1 954,636 + HMPREF1058_RS15310 0.20 -0.2 954,690 + HMPREF1058_RS15310 0.24 -1.1 954,694 + HMPREF1058_RS15310 0.24 -1.9 954,717 + HMPREF1058_RS15310 0.26 -0.3 954,737 - HMPREF1058_RS15310 0.27 +2.8 954,739 - HMPREF1058_RS15310 0.27 +3.3 954,801 + HMPREF1058_RS15310 0.31 -0.1 954,801 + HMPREF1058_RS15310 0.31 +0.2 954,802 - HMPREF1058_RS15310 0.31 +3.3 954,802 - HMPREF1058_RS15310 0.31 +4.6 954,802 - HMPREF1058_RS15310 0.31 +3.7 954,834 + HMPREF1058_RS15310 0.33 +0.3 954,862 + HMPREF1058_RS15310 0.35 +0.3 954,954 + HMPREF1058_RS15310 0.41 -0.1 954,954 + HMPREF1058_RS15310 0.41 -0.2 954,954 + HMPREF1058_RS15310 0.41 -1.2 955,063 + HMPREF1058_RS15310 0.48 -0.6 955,064 - HMPREF1058_RS15310 0.48 +4.4 955,096 - HMPREF1058_RS15310 0.50 +3.8 955,121 - HMPREF1058_RS15310 0.52 +2.7 955,149 + HMPREF1058_RS15310 0.54 +0.4 955,150 - HMPREF1058_RS15310 0.54 +2.8 955,150 - HMPREF1058_RS15310 0.54 +2.7 955,150 - HMPREF1058_RS15310 0.54 +3.5
Or see this region's nucleotide sequence