Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15300

Experiment: Vitafiber 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15305 and HMPREF1058_RS15300 are separated by 38 nucleotidesHMPREF1058_RS15300 and HMPREF1058_RS20480 are separated by 312 nucleotidesHMPREF1058_RS20480 and HMPREF1058_RS20485 are separated by 141 nucleotides HMPREF1058_RS15305: HMPREF1058_RS15305 - hypothetical protein, at 955,954 to 957,402 _RS15305 HMPREF1058_RS15300: HMPREF1058_RS15300 - DUF3575 domain-containing protein, at 957,441 to 958,037 _RS15300 HMPREF1058_RS20480: HMPREF1058_RS20480 - site-specific integrase, at 958,350 to 958,710 _RS20480 HMPREF1058_RS20485: HMPREF1058_RS20485 - mobilization protein, at 958,852 to 959,061 _RS20485 Position (kb) 957 958 959Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 956.458 kb on - strand, within HMPREF1058_RS15305at 956.458 kb on - strand, within HMPREF1058_RS15305at 956.460 kb on - strand, within HMPREF1058_RS15305at 956.474 kb on - strand, within HMPREF1058_RS15305at 956.560 kb on - strand, within HMPREF1058_RS15305at 956.566 kb on + strand, within HMPREF1058_RS15305at 956.571 kb on - strand, within HMPREF1058_RS15305at 956.574 kb on - strand, within HMPREF1058_RS15305at 956.584 kb on - strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.652 kb on + strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.653 kb on - strand, within HMPREF1058_RS15305at 956.656 kb on + strand, within HMPREF1058_RS15305at 956.784 kb on + strand, within HMPREF1058_RS15305at 956.785 kb on - strand, within HMPREF1058_RS15305at 956.844 kb on - strand, within HMPREF1058_RS15305at 956.848 kb on - strand, within HMPREF1058_RS15305at 956.848 kb on - strand, within HMPREF1058_RS15305at 956.930 kb on + strand, within HMPREF1058_RS15305at 956.931 kb on - strand, within HMPREF1058_RS15305at 957.052 kb on + strand, within HMPREF1058_RS15305at 957.053 kb on - strand, within HMPREF1058_RS15305at 957.053 kb on - strand, within HMPREF1058_RS15305at 957.101 kb on + strand, within HMPREF1058_RS15305at 957.180 kb on + strand, within HMPREF1058_RS15305at 957.181 kb on - strand, within HMPREF1058_RS15305at 957.221 kb on - strand, within HMPREF1058_RS15305at 957.283 kb on - strandat 957.351 kb on - strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.352 kb on + strandat 957.353 kb on - strandat 957.353 kb on - strandat 957.353 kb on - strandat 957.356 kb on + strandat 957.356 kb on + strandat 957.380 kb on - strandat 957.380 kb on - strandat 957.383 kb on + strandat 957.384 kb on - strandat 957.384 kb on - strandat 957.386 kb on + strandat 957.387 kb on - strandat 957.423 kb on - strandat 957.423 kb on - strandat 957.424 kb on + strandat 957.424 kb on + strandat 957.447 kb on - strandat 957.450 kb on + strandat 957.453 kb on - strandat 957.453 kb on - strandat 957.454 kb on + strandat 957.479 kb on + strandat 957.479 kb on + strandat 957.480 kb on - strandat 957.509 kb on + strand, within HMPREF1058_RS15300at 957.510 kb on - strand, within HMPREF1058_RS15300at 957.530 kb on + strand, within HMPREF1058_RS15300at 957.547 kb on + strand, within HMPREF1058_RS15300at 957.548 kb on - strand, within HMPREF1058_RS15300at 957.640 kb on + strand, within HMPREF1058_RS15300at 957.655 kb on + strand, within HMPREF1058_RS15300at 957.696 kb on - strand, within HMPREF1058_RS15300at 957.708 kb on + strand, within HMPREF1058_RS15300at 957.717 kb on + strand, within HMPREF1058_RS15300at 957.718 kb on - strand, within HMPREF1058_RS15300at 957.785 kb on - strand, within HMPREF1058_RS15300at 957.790 kb on - strand, within HMPREF1058_RS15300at 958.086 kb on + strandat 958.146 kb on - strandat 958.146 kb on - strandat 958.284 kb on - strandat 958.284 kb on - strandat 958.307 kb on - strandat 958.317 kb on + strandat 958.318 kb on - strandat 958.321 kb on + strandat 958.349 kb on + strandat 958.426 kb on + strand, within HMPREF1058_RS20480at 958.427 kb on - strand, within HMPREF1058_RS20480at 958.427 kb on - strand, within HMPREF1058_RS20480at 958.429 kb on - strand, within HMPREF1058_RS20480at 958.434 kb on + strand, within HMPREF1058_RS20480at 958.435 kb on - strand, within HMPREF1058_RS20480at 958.469 kb on - strand, within HMPREF1058_RS20480at 958.585 kb on + strand, within HMPREF1058_RS20480at 958.586 kb on + strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.587 kb on - strand, within HMPREF1058_RS20480at 958.607 kb on - strand, within HMPREF1058_RS20480at 958.627 kb on - strand, within HMPREF1058_RS20480at 958.726 kb on + strandat 958.727 kb on - strandat 958.728 kb on + strandat 958.728 kb on + strandat 958.729 kb on - strandat 958.729 kb on - strandat 958.783 kb on + strandat 958.873 kb on - strand, within HMPREF1058_RS20485at 958.950 kb on + strand, within HMPREF1058_RS20485at 958.951 kb on - strand, within HMPREF1058_RS20485

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Per-strain Table

Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C)
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956,458 - HMPREF1058_RS15305 0.35 +3.0
956,458 - HMPREF1058_RS15305 0.35 +2.6
956,460 - HMPREF1058_RS15305 0.35 +2.4
956,474 - HMPREF1058_RS15305 0.36 +2.3
956,560 - HMPREF1058_RS15305 0.42 +2.2
956,566 + HMPREF1058_RS15305 0.42 -0.2
956,571 - HMPREF1058_RS15305 0.43 +1.3
956,574 - HMPREF1058_RS15305 0.43 +2.8
956,584 - HMPREF1058_RS15305 0.43 +2.7
956,652 + HMPREF1058_RS15305 0.48 -0.5
956,652 + HMPREF1058_RS15305 0.48 +0.9
956,652 + HMPREF1058_RS15305 0.48 -0.4
956,652 + HMPREF1058_RS15305 0.48 -1.4
956,653 - HMPREF1058_RS15305 0.48 +2.6
956,653 - HMPREF1058_RS15305 0.48 +3.3
956,653 - HMPREF1058_RS15305 0.48 +4.2
956,656 + HMPREF1058_RS15305 0.48 -0.0
956,784 + HMPREF1058_RS15305 0.57 +0.6
956,785 - HMPREF1058_RS15305 0.57 +2.7
956,844 - HMPREF1058_RS15305 0.61 +3.8
956,848 - HMPREF1058_RS15305 0.62 -0.1
956,848 - HMPREF1058_RS15305 0.62 +4.8
956,930 + HMPREF1058_RS15305 0.67 +0.0
956,931 - HMPREF1058_RS15305 0.67 +2.3
957,052 + HMPREF1058_RS15305 0.76 -0.0
957,053 - HMPREF1058_RS15305 0.76 +4.6
957,053 - HMPREF1058_RS15305 0.76 +3.5
957,101 + HMPREF1058_RS15305 0.79 -1.3
957,180 + HMPREF1058_RS15305 0.85 -0.8
957,181 - HMPREF1058_RS15305 0.85 +3.4
957,221 - HMPREF1058_RS15305 0.87 +4.2
957,283 - +2.7
957,351 - +2.2
957,352 + -1.7
957,352 + +0.6
957,352 + +0.4
957,352 + -0.5
957,352 + -0.9
957,352 + -0.1
957,352 + -1.1
957,353 - +3.1
957,353 - +3.4
957,353 - +2.6
957,356 + -0.7
957,356 + +1.1
957,380 - +3.0
957,380 - +3.3
957,383 + +0.7
957,384 - +2.8
957,384 - +2.6
957,386 + +0.9
957,387 - +3.1
957,423 - +4.7
957,423 - +1.5
957,424 + -0.6
957,424 + +0.0
957,447 - +3.5
957,450 + -0.2
957,453 - +3.6
957,453 - -1.8
957,454 + +0.9
957,479 + +0.1
957,479 + +1.3
957,480 - -0.9
957,509 + HMPREF1058_RS15300 0.11 -0.3
957,510 - HMPREF1058_RS15300 0.12 +1.5
957,530 + HMPREF1058_RS15300 0.15 -2.0
957,547 + HMPREF1058_RS15300 0.18 -1.3
957,548 - HMPREF1058_RS15300 0.18 -0.6
957,640 + HMPREF1058_RS15300 0.33 +0.7
957,655 + HMPREF1058_RS15300 0.36 -1.8
957,696 - HMPREF1058_RS15300 0.43 +3.7
957,708 + HMPREF1058_RS15300 0.45 +0.4
957,717 + HMPREF1058_RS15300 0.46 +1.6
957,718 - HMPREF1058_RS15300 0.46 +2.9
957,785 - HMPREF1058_RS15300 0.58 +2.4
957,790 - HMPREF1058_RS15300 0.58 +2.1
958,086 + +0.3
958,146 - +1.4
958,146 - +1.1
958,284 - +3.0
958,284 - +3.9
958,307 - +3.0
958,317 + -0.2
958,318 - +3.1
958,321 + -0.5
958,349 + -0.6
958,426 + HMPREF1058_RS20480 0.21 -0.1
958,427 - HMPREF1058_RS20480 0.21 +1.3
958,427 - HMPREF1058_RS20480 0.21 +2.4
958,429 - HMPREF1058_RS20480 0.22 +1.5
958,434 + HMPREF1058_RS20480 0.23 +1.0
958,435 - HMPREF1058_RS20480 0.24 +1.2
958,469 - HMPREF1058_RS20480 0.33 +3.1
958,585 + HMPREF1058_RS20480 0.65 -1.3
958,586 + HMPREF1058_RS20480 0.65 -0.2
958,587 - HMPREF1058_RS20480 0.66 +1.0
958,587 - HMPREF1058_RS20480 0.66 +1.4
958,587 - HMPREF1058_RS20480 0.66 +1.9
958,607 - HMPREF1058_RS20480 0.71 +1.1
958,627 - HMPREF1058_RS20480 0.77 +1.6
958,726 + -1.9
958,727 - +1.5
958,728 + -0.1
958,728 + -0.1
958,729 - -0.3
958,729 - +0.1
958,783 + -0.4
958,873 - HMPREF1058_RS20485 0.10 -2.2
958,950 + HMPREF1058_RS20485 0.47 -0.3
958,951 - HMPREF1058_RS20485 0.47 -0.0

Or see this region's nucleotide sequence