Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14995

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,047,376	+		HMPREF1058_RS15005	0.78	-0.9
1,047,377	-		HMPREF1058_RS15005	0.78	+0.7
1,047,407	+		HMPREF1058_RS15005	0.80	+1.0
1,047,435	+		HMPREF1058_RS15005	0.82	-1.4
1,047,436	-		HMPREF1058_RS15005	0.82	+0.6
1,047,436	-		HMPREF1058_RS15005	0.82	+1.6
1,047,460	-				-0.6
1,047,515	-		HMPREF1058_RS15005	0.88	-1.2
1,047,515	-		HMPREF1058_RS15005	0.88	-0.1
1,047,517	-		HMPREF1058_RS15005	0.88	+1.1
1,047,519	-		HMPREF1058_RS15005	0.88	-0.4
1,047,552	+				+0.1
1,047,552	+				+0.2
1,047,553	-				-1.1
1,047,553	-				+0.4
1,047,554	+				-1.8
1,047,610	-				+0.9
1,047,681	+				+1.0
1,047,758	+				+1.0
1,047,804	+		HMPREF1058_RS15000	0.17	-0.7
1,047,822	+		HMPREF1058_RS15000	0.20	+0.3
1,047,823	-		HMPREF1058_RS15000	0.20	+0.5
1,047,823	-		HMPREF1058_RS15000	0.20	-0.5
1,047,836	+		HMPREF1058_RS15000	0.22	+1.2
1,047,846	-		HMPREF1058_RS15000	0.24	-0.2
1,047,858	-		HMPREF1058_RS15000	0.26	-0.2
1,047,893	-		HMPREF1058_RS15000	0.32	-0.1
1,047,893	-		HMPREF1058_RS15000	0.32	-0.0
1,047,903	-		HMPREF1058_RS15000	0.34	+0.1
1,047,935	-		HMPREF1058_RS15000	0.40	-0.3
1,047,948	+		HMPREF1058_RS15000	0.42	+2.9
1,047,966	-		HMPREF1058_RS15000	0.45	+0.6
1,047,969	-		HMPREF1058_RS15000	0.46	+0.4
1,048,118	-		HMPREF1058_RS15000	0.73	+1.5
1,048,209	-		HMPREF1058_RS15000	0.89	+0.3
1,048,423	-				+0.8
1,048,479	-		HMPREF1058_RS14995	0.11	+0.4
1,048,483	+		HMPREF1058_RS14995	0.11	+0.7
1,048,646	+		HMPREF1058_RS14995	0.28	+0.8
1,048,701	+		HMPREF1058_RS14995	0.33	-0.0
1,048,701	+		HMPREF1058_RS14995	0.33	+0.5
1,048,701	+		HMPREF1058_RS14995	0.33	+0.8
1,048,705	+		HMPREF1058_RS14995	0.34	-0.3
1,048,705	+		HMPREF1058_RS14995	0.34	-0.4
1,048,705	+		HMPREF1058_RS14995	0.34	-1.6
1,048,761	-		HMPREF1058_RS14995	0.39	+1.0
1,048,819	-		HMPREF1058_RS14995	0.45	+2.5
1,048,831	+		HMPREF1058_RS14995	0.46	+0.5
1,048,831	+		HMPREF1058_RS14995	0.46	+0.1
1,048,899	-		HMPREF1058_RS14995	0.53	+0.6
1,048,965	-		HMPREF1058_RS14995	0.60	+1.8
1,048,965	-		HMPREF1058_RS14995	0.60	+1.5
1,048,968	+		HMPREF1058_RS14995	0.60	-0.1
1,048,969	-		HMPREF1058_RS14995	0.60	+0.1
1,048,969	-		HMPREF1058_RS14995	0.60	+0.4
1,048,969	-		HMPREF1058_RS14995	0.60	+1.3
1,048,969	-		HMPREF1058_RS14995	0.60	+0.5
1,048,969	-		HMPREF1058_RS14995	0.60	-0.0
1,048,969	-		HMPREF1058_RS14995	0.60	+0.9
1,048,969	-		HMPREF1058_RS14995	0.60	+0.2
1,048,973	+		HMPREF1058_RS14995	0.60	-0.7
1,048,973	+		HMPREF1058_RS14995	0.60	-0.8
1,048,973	+		HMPREF1058_RS14995	0.60	+1.6
1,048,973	+		HMPREF1058_RS14995	0.60	+0.5
1,048,974	-		HMPREF1058_RS14995	0.61	-0.1
1,048,974	-		HMPREF1058_RS14995	0.61	+1.5
1,049,180	+		HMPREF1058_RS14995	0.81	+0.2
1,049,180	+		HMPREF1058_RS14995	0.81	+0.9
1,049,211	+		HMPREF1058_RS14995	0.84	+0.2
1,049,211	+		HMPREF1058_RS14995	0.84	-0.1
1,049,212	-		HMPREF1058_RS14995	0.84	+0.2
1,049,212	-		HMPREF1058_RS14995	0.84	+0.7
1,049,223	-		HMPREF1058_RS14995	0.86	-1.4
1,049,223	-		HMPREF1058_RS14995	0.86	+2.1
1,049,286	-				+0.1
1,049,332	-				-0.5
1,049,352	+				+0.3
1,049,353	-				+1.5
1,049,385	+				+0.8
1,049,386	-				+0.1
1,049,387	+				+1.0
1,049,405	+				+0.8
1,049,406	-				-0.2
1,049,406	-				-0.5
1,049,490	+				+0.0
1,049,493	-				-1.3
1,049,493	-				-0.7
1,049,495	-				-1.1
1,049,544	-				-1.3
1,049,547	+				-0.3
1,049,547	+				+0.5
1,049,547	+				-1.5
1,049,548	-				-0.5
1,049,667	+				-0.2
1,049,695	-		HMPREF1058_RS14990	0.11	+0.5
1,049,807	+		HMPREF1058_RS14990	0.18	-1.9
1,049,954	+		HMPREF1058_RS14990	0.26	-0.4
1,049,955	-		HMPREF1058_RS14990	0.26	-1.8
1,049,965	-		HMPREF1058_RS14990	0.27	-0.7
1,049,973	+		HMPREF1058_RS14990	0.27	+0.6
1,049,973	+		HMPREF1058_RS14990	0.27	+0.2
1,050,052	+		HMPREF1058_RS14990	0.32	-0.4
1,050,052	+				+1.7
1,050,053	-		HMPREF1058_RS14990	0.32	-1.2
1,050,053	-		HMPREF1058_RS14990	0.32	-0.6
1,050,203	-		HMPREF1058_RS14990	0.40	-0.4
1,050,284	+		HMPREF1058_RS14990	0.45	+0.1
1,050,329	-		HMPREF1058_RS14990	0.47	-1.1
1,050,329	-		HMPREF1058_RS14990	0.47	-1.6