Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14685

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,130,423	-				-0.7
1,130,510	-				-0.1
1,130,569	+		HMPREF1058_RS14690	0.10	+0.6
1,130,594	+		HMPREF1058_RS14690	0.13	+0.4
1,130,619	+		HMPREF1058_RS14690	0.15	+0.3
1,130,619	+		HMPREF1058_RS14690	0.15	+1.4
1,130,622	+		HMPREF1058_RS14690	0.16	-0.2
1,130,622	+		HMPREF1058_RS14690	0.16	-0.1
1,130,626	-		HMPREF1058_RS14690	0.16	-0.9
1,130,633	-		HMPREF1058_RS14690	0.17	-0.6
1,130,633	-		HMPREF1058_RS14690	0.17	-0.8
1,130,661	-		HMPREF1058_RS14690	0.20	-0.2
1,130,704	+		HMPREF1058_RS14690	0.24	+0.3
1,130,734	+		HMPREF1058_RS14690	0.27	-0.8
1,130,752	+		HMPREF1058_RS14690	0.29	+1.2
1,130,765	-		HMPREF1058_RS14690	0.31	+0.0
1,130,765	-		HMPREF1058_RS14690	0.31	+0.7
1,130,765	-		HMPREF1058_RS14690	0.31	+0.1
1,130,788	+		HMPREF1058_RS14690	0.33	+1.1
1,130,795	+		HMPREF1058_RS14690	0.34	-0.7
1,130,800	+		HMPREF1058_RS14690	0.34	+0.1
1,130,822	-		HMPREF1058_RS14690	0.36	-0.1
1,130,824	-		HMPREF1058_RS14690	0.37	+1.0
1,130,888	-		HMPREF1058_RS14690	0.43	+0.7
1,130,888	-		HMPREF1058_RS14690	0.43	+0.4
1,130,929	+		HMPREF1058_RS14690	0.48	-0.1
1,130,946	-		HMPREF1058_RS14690	0.49	-0.4
1,130,968	+		HMPREF1058_RS14690	0.52	+0.3
1,130,974	+		HMPREF1058_RS14690	0.52	+0.7
1,130,975	-		HMPREF1058_RS14690	0.52	+0.8
1,130,975	-		HMPREF1058_RS14690	0.52	+0.2
1,130,981	-		HMPREF1058_RS14690	0.53	+0.3
1,130,981	-		HMPREF1058_RS14690	0.53	+0.8
1,131,002	+		HMPREF1058_RS14690	0.55	+0.8
1,131,134	+		HMPREF1058_RS14690	0.69	-0.1
1,131,160	+		HMPREF1058_RS14690	0.72	-0.2
1,131,161	-		HMPREF1058_RS14690	0.72	-0.4
1,131,174	-		HMPREF1058_RS14690	0.73	+1.0
1,131,250	+				-0.1
1,131,251	-		HMPREF1058_RS14690	0.81	+2.7
1,131,251	-		HMPREF1058_RS14690	0.81	+0.7
1,131,285	-				-1.5
1,131,290	-		HMPREF1058_RS14690	0.85	+0.3
1,131,309	+		HMPREF1058_RS14690	0.87	-1.2
1,131,389	-				+0.7
1,131,455	+				+0.7
1,131,456	-				-0.0
1,131,560	+				+0.3
1,131,561	-				-1.8
1,131,633	-		HMPREF1058_RS14685	0.12	+0.7
1,131,694	+		HMPREF1058_RS14685	0.15	+0.9
1,131,695	-		HMPREF1058_RS14685	0.15	+1.0
1,131,695	-		HMPREF1058_RS14685	0.15	+0.3
1,131,695	-		HMPREF1058_RS14685	0.15	+0.3
1,131,764	+		HMPREF1058_RS14685	0.19	-0.3
1,131,818	+		HMPREF1058_RS14685	0.22	+0.1
1,131,818	+		HMPREF1058_RS14685	0.22	+2.9
1,131,818	+		HMPREF1058_RS14685	0.22	+0.9
1,131,881	+		HMPREF1058_RS14685	0.25	-0.3
1,131,915	-		HMPREF1058_RS14685	0.27	-0.1
1,132,151	+		HMPREF1058_RS14685	0.40	-0.2
1,132,190	+		HMPREF1058_RS14685	0.42	+1.3
1,132,227	-		HMPREF1058_RS14685	0.44	+1.4
1,132,229	+		HMPREF1058_RS14685	0.44	-1.0
1,132,300	-		HMPREF1058_RS14685	0.48	+0.8
1,132,358	+		HMPREF1058_RS14685	0.51	+0.5
1,132,404	+		HMPREF1058_RS14685	0.54	+0.3
1,132,434	-		HMPREF1058_RS14685	0.55	+0.7
1,132,436	-		HMPREF1058_RS14685	0.56	+0.8
1,132,436	-		HMPREF1058_RS14685	0.56	+1.1
1,132,436	-		HMPREF1058_RS14685	0.56	+0.3
1,132,501	+		HMPREF1058_RS14685	0.59	+0.7
1,132,502	-		HMPREF1058_RS14685	0.59	+0.7
1,132,502	-		HMPREF1058_RS14685	0.59	-0.1
1,132,502	-		HMPREF1058_RS14685	0.59	-0.2
1,132,506	+		HMPREF1058_RS14685	0.59	+0.6
1,132,507	-		HMPREF1058_RS14685	0.59	+0.3
1,132,602	+		HMPREF1058_RS14685	0.65	+0.8
1,132,623	-		HMPREF1058_RS14685	0.66	+0.5
1,132,623	-		HMPREF1058_RS14685	0.66	+0.6
1,132,641	+		HMPREF1058_RS14685	0.67	+1.2
1,132,642	-		HMPREF1058_RS14685	0.67	+0.4
1,132,715	+		HMPREF1058_RS14685	0.71	-1.9
1,132,720	+		HMPREF1058_RS14685	0.71	-0.1
1,132,734	-		HMPREF1058_RS14685	0.72	+1.0
1,132,735	+		HMPREF1058_RS14685	0.72	+1.2
1,132,736	-		HMPREF1058_RS14685	0.72	+0.1
1,132,740	+		HMPREF1058_RS14685	0.72	-0.3
1,132,758	+		HMPREF1058_RS14685	0.73	+0.7
1,132,887	-		HMPREF1058_RS14685	0.80	+0.9
1,132,914	+		HMPREF1058_RS14685	0.82	-0.7
1,132,914	+		HMPREF1058_RS14685	0.82	-0.6
1,132,923	-		HMPREF1058_RS14685	0.82	+1.2
1,132,988	-		HMPREF1058_RS14685	0.86	+0.2
1,133,057	-		HMPREF1058_RS14685	0.89	+0.6
1,133,069	+				+0.3
1,133,071	+				-1.0
1,133,071	+				+0.4
1,133,071	+				+0.7
1,133,072	-				-0.9
1,133,158	+				+0.3
1,133,158	+				-0.7
1,133,159	-				-1.4
1,133,159	-				-0.5
1,133,223	+				+0.1
1,133,261	+				+1.1
1,133,285	+				+1.0
1,133,285	+				+0.8
1,133,285	+				+1.5
1,133,285	+				-2.9
1,133,286	-				-0.7
1,133,286	-				-0.1
1,133,286	-				-1.1
1,133,289	+				+0.9
1,133,289	+				+0.6
1,133,289	+				+1.4
1,133,289	+				+1.0
1,133,293	-				+1.6
1,133,362	+		HMPREF1058_RS14680	0.13	+0.8
1,133,374	-		HMPREF1058_RS14680	0.14	+0.4
1,133,422	+		HMPREF1058_RS14680	0.19	+0.9
1,133,442	+		HMPREF1058_RS14680	0.21	+0.4
1,133,503	+		HMPREF1058_RS14680	0.28	+0.5
1,133,503	+		HMPREF1058_RS14680	0.28	+0.8
1,133,505	+		HMPREF1058_RS14680	0.28	+0.9
1,133,506	-		HMPREF1058_RS14680	0.28	-1.2
1,133,506	-		HMPREF1058_RS14680	0.28	+0.3
1,133,574	-		HMPREF1058_RS14680	0.36	-2.1
1,133,706	+		HMPREF1058_RS14680	0.50	+1.1
1,133,707	-		HMPREF1058_RS14680	0.50	+0.8
1,133,851	+		HMPREF1058_RS14680	0.66	+0.6
1,133,898	+		HMPREF1058_RS14680	0.71	+1.3
1,133,911	+		HMPREF1058_RS14680	0.72	+1.1
1,133,911	+		HMPREF1058_RS14680	0.72	+0.4
1,133,999	+		HMPREF1058_RS14680	0.82	+1.0
1,134,107	-				+0.1
1,134,130	+				+1.9
1,134,138	-				-0.7
1,134,186	+				+0.2
1,134,187	-				+0.9