Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14220

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,253,145	+				-0.7
1,253,172	+		HMPREF1058_RS14225	0.10	-2.0
1,253,221	-		HMPREF1058_RS14225	0.15	+0.1
1,253,272	-		HMPREF1058_RS14225	0.20	-0.9
1,253,375	-		HMPREF1058_RS14225	0.31	+0.7
1,253,405	+		HMPREF1058_RS14225	0.34	-2.0
1,253,467	+		HMPREF1058_RS14225	0.40	-0.2
1,253,467	+		HMPREF1058_RS14225	0.40	+1.2
1,253,468	-		HMPREF1058_RS14225	0.40	-2.9
1,253,503	+		HMPREF1058_RS14225	0.44	-1.1
1,253,655	+		HMPREF1058_RS14225	0.59	-2.4
1,253,676	-		HMPREF1058_RS14225	0.62	-2.3
1,253,676	-		HMPREF1058_RS14225	0.62	-2.2
1,253,773	-		HMPREF1058_RS14225	0.71	-0.5
1,253,827	-		HMPREF1058_RS14225	0.77	-1.0
1,253,827	-		HMPREF1058_RS14225	0.77	-0.6
1,253,833	-		HMPREF1058_RS14225	0.78	-1.0
1,253,846	-		HMPREF1058_RS14225	0.79	-1.9
1,253,846	-		HMPREF1058_RS14225	0.79	-2.3
1,253,846	-		HMPREF1058_RS14225	0.79	+0.2
1,253,952	-		HMPREF1058_RS14225	0.90	+0.9
1,253,952	-		HMPREF1058_RS14225	0.90	-0.4
1,253,956	+				+0.5
1,253,967	-				-0.0
1,254,013	-				+0.2
1,254,013	-				-1.9
1,254,013	-				-1.6
1,254,114	-				-1.5
1,254,114	-				+0.6
1,254,118	+				+1.1
1,254,118	+				+0.7
1,254,162	+				+0.2
1,254,176	-				+1.1
1,254,260	-		HMPREF1058_RS14220	0.19	+2.5
1,254,301	-		HMPREF1058_RS14220	0.25	+2.2
1,254,328	-		HMPREF1058_RS14220	0.29	+2.4
1,254,367	-		HMPREF1058_RS14220	0.34	+2.9
1,254,488	+		HMPREF1058_RS14220	0.52	-0.1
1,254,549	+		HMPREF1058_RS14220	0.61	-1.4
1,254,550	-		HMPREF1058_RS14220	0.61	+3.6
1,254,584	-		HMPREF1058_RS14220	0.66	+1.5
1,254,589	-		HMPREF1058_RS14220	0.67	+4.4
1,254,658	+		HMPREF1058_RS14220	0.77	-0.9
1,254,673	-				+4.2
1,254,750	-				+4.3
1,254,816	+				-1.2
1,254,860	+				+0.7
1,254,941	+				+0.2
1,254,941	+				+0.8
1,254,988	+				+0.4
1,254,997	+				-0.7
1,254,997	+				+0.4
1,254,999	+				-1.0
1,254,999	+				-2.5
1,255,092	+		HMPREF1058_RS14215	0.13	-0.3
1,255,129	+		HMPREF1058_RS14215	0.18	+0.1
1,255,131	+		HMPREF1058_RS14215	0.19	+0.1
1,255,133	+		HMPREF1058_RS14215	0.19	+0.3
1,255,133	+		HMPREF1058_RS14215	0.19	-1.6
1,255,133	+		HMPREF1058_RS14215	0.19	+0.1
1,255,208	+		HMPREF1058_RS14215	0.30	+0.0
1,255,208	+		HMPREF1058_RS14215	0.30	-2.8
1,255,521	+		HMPREF1058_RS14215	0.75	-2.4
1,255,694	+				-1.6