Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13950

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,319,105	+		HMPREF1058_RS13960	0.51	-0.3
1,319,106	-		HMPREF1058_RS13960	0.51	+0.1
1,319,176	-		HMPREF1058_RS13960	0.60	-0.1
1,319,253	+		HMPREF1058_RS13960	0.69	-2.2
1,319,254	-		HMPREF1058_RS13960	0.69	-0.2
1,319,255	+		HMPREF1058_RS13960	0.69	+2.2
1,319,256	-		HMPREF1058_RS13960	0.69	+0.4
1,319,256	-				+1.4
1,319,258	+		HMPREF1058_RS13960	0.69	-0.8
1,319,259	-		HMPREF1058_RS13960	0.69	+0.3
1,319,313	+		HMPREF1058_RS13960	0.76	+0.4
1,319,394	-		HMPREF1058_RS13960	0.85	-2.3
1,319,442	+				-0.4
1,320,066	-		HMPREF1058_RS13950	0.32	-0.0
1,320,150	-		HMPREF1058_RS13950	0.70	+0.6
1,320,150	-		HMPREF1058_RS13950	0.70	+0.6
1,320,151	+		HMPREF1058_RS13950	0.71	-1.9
1,320,160	+		HMPREF1058_RS13950	0.75	+1.2
1,320,173	+		HMPREF1058_RS13950	0.81	+0.6
1,320,173	+		HMPREF1058_RS13950	0.81	-0.9
1,320,174	-		HMPREF1058_RS13950	0.81	+0.5
1,320,174	-		HMPREF1058_RS13950	0.81	+1.1
1,320,221	+				+0.4
1,320,245	-				-0.7
1,320,266	+				-0.2
1,320,314	-				-0.1
1,320,336	+				-1.9
1,320,395	+				-0.5
1,320,395	+				-0.5
1,320,477	+				-0.4
1,320,478	-				-0.2
1,320,485	+				+0.6
1,320,554	-		HMPREF1058_RS13945	0.14	+0.9
1,320,585	+		HMPREF1058_RS13945	0.16	+0.7
1,320,614	-		HMPREF1058_RS13945	0.18	-0.4
1,320,639	+		HMPREF1058_RS13945	0.20	+0.1
1,320,642	+		HMPREF1058_RS13945	0.20	-0.1
1,320,643	-		HMPREF1058_RS13945	0.20	+2.5
1,320,705	-		HMPREF1058_RS13945	0.24	+0.0
1,320,731	-		HMPREF1058_RS13945	0.26	+1.1
1,320,734	-		HMPREF1058_RS13945	0.26	+0.9
1,320,734	-		HMPREF1058_RS13945	0.26	+0.9
1,320,887	+		HMPREF1058_RS13945	0.36	+0.1
1,320,914	+		HMPREF1058_RS13945	0.37	-0.6
1,320,914	+		HMPREF1058_RS13945	0.37	-1.9
1,320,916	+		HMPREF1058_RS13945	0.38	-0.9
1,320,917	-		HMPREF1058_RS13945	0.38	-0.5
1,320,917	-		HMPREF1058_RS13945	0.38	+0.7
1,320,917	-		HMPREF1058_RS13945	0.38	-0.6
1,320,917	-		HMPREF1058_RS13945	0.38	+1.7
1,320,959	+		HMPREF1058_RS13945	0.40	-0.8
1,320,985	+		HMPREF1058_RS13945	0.42	-0.2
1,321,069	+		HMPREF1058_RS13945	0.47	-0.4
1,321,080	-		HMPREF1058_RS13945	0.48	-0.4
1,321,084	+		HMPREF1058_RS13945	0.48	-0.6
1,321,085	-		HMPREF1058_RS13945	0.48	-0.1
1,321,085	-		HMPREF1058_RS13945	0.48	-0.8
1,321,203	+		HMPREF1058_RS13945	0.56	-0.7
1,321,204	-		HMPREF1058_RS13945	0.56	-0.5
1,321,213	+		HMPREF1058_RS13945	0.57	+0.1