Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13425

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,497,587	+		HMPREF1058_RS13430	0.53	+0.5
1,497,692	+		HMPREF1058_RS13430	0.60	-1.2
1,497,710	+		HMPREF1058_RS13430	0.61	-0.1
1,497,749	+		HMPREF1058_RS13430	0.64	-0.5
1,497,750	-		HMPREF1058_RS13430	0.64	+0.9
1,497,750	-		HMPREF1058_RS13430	0.64	-0.3
1,497,752	-		HMPREF1058_RS13430	0.64	-0.4
1,497,857	+		HMPREF1058_RS13430	0.72	-0.0
1,497,886	+		HMPREF1058_RS13430	0.74	-0.1
1,497,887	-		HMPREF1058_RS13430	0.74	+0.5
1,498,275	+				-0.5
1,498,276	-				-0.9
1,498,319	+				-0.4
1,498,388	-				+0.1
1,498,619	+				+0.6
1,498,624	-				+0.9
1,498,655	+		HMPREF1058_RS13425	0.11	+0.7
1,498,682	-		HMPREF1058_RS13425	0.15	-0.4
1,498,697	+		HMPREF1058_RS13425	0.17	+1.3
1,498,698	-		HMPREF1058_RS13425	0.17	-0.6
1,498,702	+		HMPREF1058_RS13425	0.18	+0.9
1,498,702	+		HMPREF1058_RS13425	0.18	+1.5
1,498,824	-		HMPREF1058_RS13425	0.36	+0.3
1,498,824	-		HMPREF1058_RS13425	0.36	-0.5
1,498,824	-		HMPREF1058_RS13425	0.36	-0.0
1,498,994	+		HMPREF1058_RS13425	0.61	+1.2
1,498,994	+		HMPREF1058_RS13425	0.61	+1.2
1,498,994	+		HMPREF1058_RS13425	0.61	+0.2
1,498,994	+		HMPREF1058_RS13425	0.61	+0.9
1,498,995	-		HMPREF1058_RS13425	0.61	-1.1
1,499,093	-		HMPREF1058_RS13425	0.75	-1.3
1,499,115	+		HMPREF1058_RS13425	0.79	+1.8
1,499,130	+		HMPREF1058_RS13425	0.81	+0.7
1,499,176	+		HMPREF1058_RS13425	0.88	+1.0
1,499,380	-				-0.8
1,499,531	+		HMPREF1058_RS13420	0.14	+0.0
1,499,577	+		HMPREF1058_RS13420	0.22	-0.7
1,499,579	+		HMPREF1058_RS13420	0.22	-0.1
1,499,621	+		HMPREF1058_RS13420	0.30	-0.4
1,499,653	+		HMPREF1058_RS13420	0.35	-0.0
1,499,802	-		HMPREF1058_RS13420	0.62	-1.8
1,499,912	+		HMPREF1058_RS13420	0.81	-0.5
1,499,913	-		HMPREF1058_RS13420	0.81	+0.3
1,499,925	+		HMPREF1058_RS13420	0.83	-0.3
1,499,933	+		HMPREF1058_RS13420	0.85	+0.8
1,499,934	-		HMPREF1058_RS13420	0.85	+0.0
1,499,944	+		HMPREF1058_RS13420	0.87	+0.3
1,500,023	+				+0.0
1,500,024	-				-1.0
1,500,027	-				-1.2
1,500,044	-				-0.7
1,500,106	+				+0.4
1,500,106	+				+0.1
1,500,136	+				-0.9
1,500,137	-				-0.2
1,500,149	+				-0.2
1,500,150	-				-0.6
1,500,154	+				-1.4