Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13000

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,618,428	-		HMPREF1058_RS13010	0.89	-1.2
1,618,428	-		HMPREF1058_RS13010	0.89	-1.8
1,618,481	+				-0.4
1,618,489	+				-0.4
1,618,530	+				+0.9
1,618,541	-				-0.5
1,618,587	+		HMPREF1058_RS13005	0.14	-1.0
1,618,588	-		HMPREF1058_RS13005	0.14	-0.4
1,618,588	-		HMPREF1058_RS13005	0.14	-2.5
1,618,632	+		HMPREF1058_RS13005	0.18	-0.4
1,618,632	+		HMPREF1058_RS13005	0.18	-1.0
1,618,632	+		HMPREF1058_RS13005	0.18	-0.2
1,618,689	+		HMPREF1058_RS13005	0.24	-0.1
1,618,690	-		HMPREF1058_RS13005	0.24	-1.0
1,618,696	+		HMPREF1058_RS13005	0.25	+0.7
1,618,700	-		HMPREF1058_RS13005	0.25	-0.3
1,618,700	-		HMPREF1058_RS13005	0.25	-0.3
1,618,714	+				+1.9
1,618,714	+		HMPREF1058_RS13005	0.27	-0.5
1,618,714	+		HMPREF1058_RS13005	0.27	-0.6
1,618,715	-		HMPREF1058_RS13005	0.27	+0.0
1,618,715	-		HMPREF1058_RS13005	0.27	+0.1
1,618,722	-		HMPREF1058_RS13005	0.28	-1.0
1,618,724	-		HMPREF1058_RS13005	0.28	-1.0
1,618,785	+		HMPREF1058_RS13005	0.34	-0.5
1,618,785	+		HMPREF1058_RS13005	0.34	+3.8
1,618,785	+		HMPREF1058_RS13005	0.34	+0.1
1,618,786	-		HMPREF1058_RS13005	0.34	+0.5
1,618,876	-		HMPREF1058_RS13005	0.43	-0.5
1,618,937	+		HMPREF1058_RS13005	0.50	+1.6
1,618,945	+		HMPREF1058_RS13005	0.51	-2.2
1,618,991	+		HMPREF1058_RS13005	0.55	-0.2
1,618,991	+		HMPREF1058_RS13005	0.55	-0.0
1,618,992	-		HMPREF1058_RS13005	0.55	-0.1
1,619,109	-		HMPREF1058_RS13005	0.67	+0.1
1,619,171	+		HMPREF1058_RS13005	0.74	+0.6
1,619,283	+		HMPREF1058_RS13005	0.85	-1.0
1,619,284	-		HMPREF1058_RS13005	0.85	+0.4
1,619,336	+				-0.1
1,619,336	+				-0.3
1,619,337	-				-3.2
1,619,338	+				-0.2
1,619,341	-				-0.4
1,619,388	+				+1.0
1,619,389	-				+0.3
1,619,393	-				-0.5
1,619,396	-				-0.5
1,619,396	-				-0.6
1,619,397	+				-0.4
1,619,397	+				-0.2
1,619,398	-				+0.3
1,619,447	+				-1.1
1,619,468	+				-2.1
1,619,569	+		HMPREF1058_RS13000	0.11	-0.2
1,619,570	-		HMPREF1058_RS13000	0.11	+1.6
1,619,573	+		HMPREF1058_RS13000	0.11	-0.1
1,619,626	+		HMPREF1058_RS13000	0.14	+0.5
1,619,626	+		HMPREF1058_RS13000	0.14	-0.8
1,619,710	+		HMPREF1058_RS13000	0.20	-0.6
1,619,828	+		HMPREF1058_RS13000	0.27	+0.3
1,619,973	-		HMPREF1058_RS13000	0.36	+1.9
1,620,005	-		HMPREF1058_RS13000	0.38	+2.3
1,620,008	+		HMPREF1058_RS13000	0.38	+0.5
1,620,008	+		HMPREF1058_RS13000	0.38	+0.3
1,620,017	+		HMPREF1058_RS13000	0.39	-1.1
1,620,017	+		HMPREF1058_RS13000	0.39	-0.5
1,620,017	+		HMPREF1058_RS13000	0.39	+0.1
1,620,028	+		HMPREF1058_RS13000	0.39	+2.1
1,620,029	-		HMPREF1058_RS13000	0.39	+1.5
1,620,129	-		HMPREF1058_RS13000	0.46	+0.5
1,620,133	-		HMPREF1058_RS13000	0.46	+2.0
1,620,183	+		HMPREF1058_RS13000	0.49	+1.7
1,620,184	-		HMPREF1058_RS13000	0.49	+1.1
1,620,187	+		HMPREF1058_RS13000	0.49	-0.3
1,620,188	-		HMPREF1058_RS13000	0.49	+1.6
1,620,265	-		HMPREF1058_RS13000	0.54	+1.0
1,620,275	+		HMPREF1058_RS13000	0.55	-1.3
1,620,307	-		HMPREF1058_RS13000	0.57	+0.9
1,620,346	-		HMPREF1058_RS13000	0.59	+0.9
1,620,350	-		HMPREF1058_RS13000	0.59	+1.3
1,620,408	-		HMPREF1058_RS13000	0.63	+0.2
1,620,474	+		HMPREF1058_RS13000	0.67	+0.1
1,620,474	+		HMPREF1058_RS13000	0.67	-0.5
1,620,475	-		HMPREF1058_RS13000	0.67	+0.2
1,620,480	+		HMPREF1058_RS13000	0.68	-1.3
1,620,503	+		HMPREF1058_RS13000	0.69	+0.7
1,620,505	+		HMPREF1058_RS13000	0.69	+0.3
1,620,505	+		HMPREF1058_RS13000	0.69	-0.4
1,620,506	-		HMPREF1058_RS13000	0.69	+1.3
1,620,510	-		HMPREF1058_RS13000	0.69	-1.6
1,620,687	+		HMPREF1058_RS13000	0.80	-0.0
1,620,688	-		HMPREF1058_RS13000	0.80	-0.6
1,620,724	+		HMPREF1058_RS13000	0.83	+0.7
1,620,728	-		HMPREF1058_RS13000	0.83	-1.4
1,620,728	-		HMPREF1058_RS13000	0.83	-0.1
1,620,728	-		HMPREF1058_RS13000	0.83	+0.5
1,620,753	-		HMPREF1058_RS13000	0.85	+1.4
1,620,754	+		HMPREF1058_RS13000	0.85	+0.3
1,620,755	-		HMPREF1058_RS13000	0.85	+0.2
1,620,829	+		HMPREF1058_RS13000	0.89	+0.7
1,620,829	+		HMPREF1058_RS13000	0.89	+0.6
1,620,830	-		HMPREF1058_RS13000	0.89	+0.5
1,620,830	-		HMPREF1058_RS13000	0.89	+0.4
1,620,830	-		HMPREF1058_RS13000	0.89	+0.8
1,620,831	+		HMPREF1058_RS13000	0.89	-0.3
1,620,831	+		HMPREF1058_RS13000	0.89	+0.1
1,620,832	-		HMPREF1058_RS13000	0.89	-0.1
1,620,832	-		HMPREF1058_RS13000	0.89	+0.3
1,620,833	+		HMPREF1058_RS13000	0.89	-0.5
1,620,833	+		HMPREF1058_RS13000	0.89	+0.7
1,620,834	-		HMPREF1058_RS13000	0.90	+1.7
1,620,834	-		HMPREF1058_RS13000	0.90	+0.8
1,620,834	-		HMPREF1058_RS13000	0.90	+2.1
1,620,834	-		HMPREF1058_RS13000	0.90	+0.8
1,620,838	-		HMPREF1058_RS13000	0.90	-1.2
1,620,992	-				+0.1
1,621,001	+				-0.4
1,621,001	+				-1.0
1,621,002	-				-0.1
1,621,046	+				-0.3
1,621,160	+		HMPREF1058_RS12995	0.19	-0.0
1,621,164	+		HMPREF1058_RS12995	0.20	+1.7
1,621,164	+		HMPREF1058_RS12995	0.20	+1.0
1,621,224	-				-0.3
1,621,224	-		HMPREF1058_RS12995	0.41	-0.4
1,621,239	-				+1.8
1,621,239	-		HMPREF1058_RS12995	0.47	-1.8
1,621,260	+		HMPREF1058_RS12995	0.54	+0.4
1,621,393	+				+0.5
1,621,398	+				+0.3
1,621,398	+				-0.8
1,621,398	+				-0.9
1,621,399	-				+1.0
1,621,454	+		HMPREF1058_RS12990	0.29	+1.9
1,621,454	+		HMPREF1058_RS12990	0.29	-0.8
1,621,457	-		HMPREF1058_RS12990	0.30	+0.4
1,621,522	+		HMPREF1058_RS12990	0.65	+0.5
1,621,602	+				-1.0
1,621,602	+				-0.5
1,621,646	+				+1.2
1,621,690	+				-1.7
1,621,725	+				+0.4
1,621,736	+				+0.0
1,621,739	+				-1.2
1,621,739	+				-0.6
1,621,960	+		HMPREF1058_RS12985	0.10	-0.5
1,621,961	-		HMPREF1058_RS12985	0.11	-0.7