Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119605 and HMPREF1058_RS12150 are separated by 608 nucleotides HMPREF1058_RS12150 and HMPREF1058_RS12145 are separated by 117 nucleotides HMPREF1058_RS12145 and HMPREF1058_RS12140 are separated by 104 nucleotides
HMPREF1058_RS0119605: HMPREF1058_RS0119605 - helix-turn-helix transcriptional regulator, at 190,677 to 191,177
_RS0119605
HMPREF1058_RS12150: HMPREF1058_RS12150 - PD-(D/E)XK nuclease family transposase, at 191,786 to 192,094
_RS12150
HMPREF1058_RS12145: HMPREF1058_RS12145 - membrane protein, at 192,212 to 192,862
_RS12145
HMPREF1058_RS12140: HMPREF1058_RS12140 - acetylxylan esterase, at 192,967 to 194,277
_RS12140
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.898 kb on + strand, within HMPREF1058_RS0119605 at 190.920 kb on + strand, within HMPREF1058_RS0119605 at 191.005 kb on - strand, within HMPREF1058_RS0119605 at 191.018 kb on - strand, within HMPREF1058_RS0119605 at 191.022 kb on + strand, within HMPREF1058_RS0119605 at 191.023 kb on - strand, within HMPREF1058_RS0119605 at 191.024 kb on + strand, within HMPREF1058_RS0119605 at 191.024 kb on + strand, within HMPREF1058_RS0119605 at 191.024 kb on + strand, within HMPREF1058_RS0119605 at 191.025 kb on - strand, within HMPREF1058_RS0119605 at 191.031 kb on - strand, within HMPREF1058_RS0119605 at 191.032 kb on + strand, within HMPREF1058_RS0119605 at 191.032 kb on + strand, within HMPREF1058_RS0119605 at 191.033 kb on - strand, within HMPREF1058_RS0119605 at 191.033 kb on - strand, within HMPREF1058_RS0119605 at 191.033 kb on - strand, within HMPREF1058_RS0119605 at 191.037 kb on - strand, within HMPREF1058_RS0119605 at 191.166 kb on + strand at 191.166 kb on + strand at 191.170 kb on + strand at 191.184 kb on + strand at 191.221 kb on + strand at 191.221 kb on + strand at 191.226 kb on + strand at 191.232 kb on - strand at 191.233 kb on + strand at 191.264 kb on + strand at 191.322 kb on - strand at 191.322 kb on - strand at 191.641 kb on + strand at 191.788 kb on - strand at 191.853 kb on - strand, within HMPREF1058_RS12150 at 191.996 kb on + strand, within HMPREF1058_RS12150 at 191.996 kb on + strand, within HMPREF1058_RS12150 at 191.997 kb on - strand, within HMPREF1058_RS12150 at 192.110 kb on + strand at 192.126 kb on + strand at 192.127 kb on - strand at 192.136 kb on - strand at 192.136 kb on - strand at 192.148 kb on - strand at 192.165 kb on + strand at 192.185 kb on - strand at 192.260 kb on - strand at 192.379 kb on + strand, within HMPREF1058_RS12145 at 192.380 kb on - strand, within HMPREF1058_RS12145 at 192.428 kb on - strand, within HMPREF1058_RS12145 at 192.536 kb on + strand, within HMPREF1058_RS12145 at 192.560 kb on - strand, within HMPREF1058_RS12145 at 192.618 kb on + strand, within HMPREF1058_RS12145 at 192.636 kb on + strand, within HMPREF1058_RS12145 at 192.636 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.649 kb on + strand, within HMPREF1058_RS12145 at 192.650 kb on - strand, within HMPREF1058_RS12145 at 192.650 kb on - strand, within HMPREF1058_RS12145 at 192.683 kb on + strand, within HMPREF1058_RS12145 at 192.684 kb on - strand, within HMPREF1058_RS12145 at 192.701 kb on + strand, within HMPREF1058_RS12145 at 192.843 kb on - strand at 192.862 kb on + strand at 192.914 kb on + strand at 192.927 kb on + strand at 192.928 kb on - strand at 192.936 kb on + strand at 192.939 kb on - strand at 192.954 kb on + strand at 193.072 kb on + strand at 193.073 kb on - strand at 193.077 kb on + strand at 193.080 kb on - strand at 193.080 kb on - strand at 193.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 190,898 + HMPREF1058_RS0119605 0.44 -1.5 190,920 + HMPREF1058_RS0119605 0.49 -0.1 191,005 - HMPREF1058_RS0119605 0.65 -0.2 191,018 - HMPREF1058_RS0119605 0.68 -0.2 191,022 + HMPREF1058_RS0119605 0.69 -0.3 191,023 - HMPREF1058_RS0119605 0.69 -0.2 191,024 + HMPREF1058_RS0119605 0.69 +0.5 191,024 + HMPREF1058_RS0119605 0.69 -1.1 191,024 + HMPREF1058_RS0119605 0.69 -0.5 191,025 - HMPREF1058_RS0119605 0.69 +0.0 191,031 - HMPREF1058_RS0119605 0.71 +0.3 191,032 + HMPREF1058_RS0119605 0.71 -1.4 191,032 + HMPREF1058_RS0119605 0.71 -0.5 191,033 - HMPREF1058_RS0119605 0.71 -1.2 191,033 - HMPREF1058_RS0119605 0.71 -0.5 191,033 - HMPREF1058_RS0119605 0.71 +0.3 191,037 - HMPREF1058_RS0119605 0.72 -0.6 191,166 + -0.7 191,166 + +0.3 191,170 + +0.8 191,184 + +0.9 191,221 + -0.1 191,221 + +0.4 191,226 + -0.0 191,232 - +0.1 191,233 + -0.3 191,264 + +0.4 191,322 - -1.8 191,322 - +1.5 191,641 + -2.8 191,788 - -0.9 191,853 - HMPREF1058_RS12150 0.22 -1.2 191,996 + HMPREF1058_RS12150 0.68 -0.7 191,996 + HMPREF1058_RS12150 0.68 +0.4 191,997 - HMPREF1058_RS12150 0.68 +1.9 192,110 + +0.3 192,126 + +0.8 192,127 - +0.0 192,136 - +0.2 192,136 - -0.5 192,148 - -0.0 192,165 + +0.1 192,185 - -1.0 192,260 - +0.2 192,379 + HMPREF1058_RS12145 0.26 -0.1 192,380 - HMPREF1058_RS12145 0.26 -1.0 192,428 - HMPREF1058_RS12145 0.33 -1.0 192,536 + HMPREF1058_RS12145 0.50 -0.3 192,560 - HMPREF1058_RS12145 0.53 +1.2 192,618 + HMPREF1058_RS12145 0.62 -0.1 192,636 + HMPREF1058_RS12145 0.65 +0.2 192,636 + HMPREF1058_RS12145 0.65 +0.2 192,649 + HMPREF1058_RS12145 0.67 -0.7 192,649 + HMPREF1058_RS12145 0.67 +0.3 192,649 + HMPREF1058_RS12145 0.67 -0.1 192,649 + HMPREF1058_RS12145 0.67 -0.7 192,649 + HMPREF1058_RS12145 0.67 -0.9 192,649 + HMPREF1058_RS12145 0.67 -1.5 192,649 + HMPREF1058_RS12145 0.67 +1.3 192,650 - HMPREF1058_RS12145 0.67 -0.4 192,650 - HMPREF1058_RS12145 0.67 -0.5 192,683 + HMPREF1058_RS12145 0.72 +0.3 192,684 - HMPREF1058_RS12145 0.73 +0.5 192,701 + HMPREF1058_RS12145 0.75 -0.2 192,843 - +0.6 192,862 + +0.1 192,914 + -0.5 192,927 + +0.8 192,928 - -0.3 192,936 + -0.1 192,939 - +0.8 192,954 + +0.7 193,072 + -0.8 193,073 - -0.6 193,077 + -1.1 193,080 - +0.4 193,080 - +0.3 193,088 + -0.2
Or see this region's nucleotide sequence