Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11955 and HMPREF1058_RS11950 are separated by 27 nucleotides HMPREF1058_RS11950 and HMPREF1058_RS11945 overlap by 1 nucleotides
HMPREF1058_RS11955: HMPREF1058_RS11955 - calcium-translocating P-type ATPase, PMCA-type, at 236,868 to 239,498
_RS11955
HMPREF1058_RS11950: HMPREF1058_RS11950 - HAD family phosphatase, at 239,526 to 240,140
_RS11950
HMPREF1058_RS11945: HMPREF1058_RS11945 - bifunctional riboflavin kinase/FAD synthetase, at 240,140 to 241,060
_RS11945
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 239.509 kb on - strand at 239.517 kb on + strand at 239.517 kb on + strand at 239.518 kb on - strand at 239.535 kb on - strand at 239.631 kb on - strand, within HMPREF1058_RS11950 at 239.768 kb on + strand, within HMPREF1058_RS11950 at 239.785 kb on + strand, within HMPREF1058_RS11950 at 239.815 kb on + strand, within HMPREF1058_RS11950 at 239.815 kb on + strand, within HMPREF1058_RS11950 at 239.816 kb on - strand, within HMPREF1058_RS11950 at 239.816 kb on - strand, within HMPREF1058_RS11950 at 239.838 kb on + strand, within HMPREF1058_RS11950 at 239.838 kb on + strand, within HMPREF1058_RS11950 at 239.839 kb on - strand, within HMPREF1058_RS11950 at 239.839 kb on - strand, within HMPREF1058_RS11950 at 239.840 kb on + strand, within HMPREF1058_RS11950 at 239.841 kb on - strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 240.096 kb on + strand at 241.058 kb on + strand at 241.108 kb on - strand at 241.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 239,509 - -1.8 239,517 + -1.2 239,517 + -0.7 239,518 - -0.8 239,535 - -0.7 239,631 - HMPREF1058_RS11950 0.17 +0.4 239,768 + HMPREF1058_RS11950 0.39 -1.2 239,785 + HMPREF1058_RS11950 0.42 -2.2 239,815 + HMPREF1058_RS11950 0.47 +0.2 239,815 + HMPREF1058_RS11950 0.47 -0.9 239,816 - HMPREF1058_RS11950 0.47 -1.6 239,816 - HMPREF1058_RS11950 0.47 -1.4 239,838 + HMPREF1058_RS11950 0.51 +0.4 239,838 + HMPREF1058_RS11950 0.51 +0.1 239,839 - HMPREF1058_RS11950 0.51 -1.2 239,839 - HMPREF1058_RS11950 0.51 -1.0 239,840 + HMPREF1058_RS11950 0.51 -0.7 239,841 - HMPREF1058_RS11950 0.51 -1.5 239,858 + HMPREF1058_RS11950 0.54 +0.4 239,858 + HMPREF1058_RS11950 0.54 -1.4 239,858 + HMPREF1058_RS11950 0.54 -2.0 240,096 + -1.1 241,058 + -0.4 241,108 - -1.7 241,121 + -0.4
Or see this region's nucleotide sequence