Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11320 and HMPREF1058_RS11315 are separated by 11 nucleotides HMPREF1058_RS11315 and HMPREF1058_RS11310 are separated by 4 nucleotides HMPREF1058_RS11310 and HMPREF1058_RS11305 are separated by 37 nucleotides
HMPREF1058_RS11320: HMPREF1058_RS11320 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 403,615 to 404,670
_RS11320
HMPREF1058_RS11315: HMPREF1058_RS11315 - tRNA pseudouridine(55) synthase TruB, at 404,682 to 405,389
_RS11315
HMPREF1058_RS11310: HMPREF1058_RS11310 - undecaprenyl-diphosphate phosphatase, at 405,394 to 406,194
_RS11310
HMPREF1058_RS11305: HMPREF1058_RS11305 - DUF3098 domain-containing protein, at 406,232 to 406,477
_RS11305
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.781 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 404.995 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.000 kb on - strand, within HMPREF1058_RS11315 at 405.081 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.099 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.106 kb on - strand, within HMPREF1058_RS11315 at 405.164 kb on - strand, within HMPREF1058_RS11315 at 405.179 kb on - strand, within HMPREF1058_RS11315 at 405.222 kb on - strand, within HMPREF1058_RS11315 at 405.250 kb on - strand at 405.303 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.308 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.313 kb on - strand, within HMPREF1058_RS11315 at 405.364 kb on - strand at 405.441 kb on - strand at 405.453 kb on - strand at 405.463 kb on - strand at 405.481 kb on - strand, within HMPREF1058_RS11310 at 405.493 kb on - strand, within HMPREF1058_RS11310 at 405.500 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.554 kb on - strand, within HMPREF1058_RS11310 at 405.556 kb on - strand, within HMPREF1058_RS11310 at 405.622 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 406.016 kb on - strand, within HMPREF1058_RS11310 at 406.019 kb on - strand, within HMPREF1058_RS11310 at 406.030 kb on - strand, within HMPREF1058_RS11310 at 406.088 kb on - strand, within HMPREF1058_RS11310 at 406.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 404,781 - HMPREF1058_RS11315 0.14 +0.3 404,995 - HMPREF1058_RS11315 0.44 +0.3 404,995 - HMPREF1058_RS11315 0.44 +1.1 405,000 - HMPREF1058_RS11315 0.45 +1.0 405,000 - HMPREF1058_RS11315 0.45 +0.2 405,081 - HMPREF1058_RS11315 0.56 +0.6 405,099 - HMPREF1058_RS11315 0.59 +0.2 405,099 - HMPREF1058_RS11315 0.59 +0.4 405,099 - HMPREF1058_RS11315 0.59 +0.8 405,106 - HMPREF1058_RS11315 0.60 +0.8 405,106 - HMPREF1058_RS11315 0.60 +0.6 405,164 - HMPREF1058_RS11315 0.68 -0.5 405,179 - HMPREF1058_RS11315 0.70 +0.7 405,222 - HMPREF1058_RS11315 0.76 +0.5 405,250 - +0.6 405,303 - HMPREF1058_RS11315 0.88 +0.8 405,308 - HMPREF1058_RS11315 0.88 +0.5 405,308 - HMPREF1058_RS11315 0.88 +0.6 405,313 - HMPREF1058_RS11315 0.89 +0.3 405,313 - HMPREF1058_RS11315 0.89 +0.8 405,364 - +1.0 405,441 - +1.0 405,453 - +0.3 405,463 - +0.4 405,481 - HMPREF1058_RS11310 0.11 -0.1 405,493 - HMPREF1058_RS11310 0.12 +1.0 405,500 - HMPREF1058_RS11310 0.13 +1.0 405,548 - HMPREF1058_RS11310 0.19 +2.6 405,548 - HMPREF1058_RS11310 0.19 -0.2 405,554 - HMPREF1058_RS11310 0.20 -1.3 405,556 - HMPREF1058_RS11310 0.20 -2.6 405,622 - HMPREF1058_RS11310 0.28 +0.5 405,844 - HMPREF1058_RS11310 0.56 +0.2 405,844 - HMPREF1058_RS11310 0.56 -0.2 405,844 - HMPREF1058_RS11310 0.56 -1.7 405,844 - HMPREF1058_RS11310 0.56 -1.4 406,016 - HMPREF1058_RS11310 0.78 -0.2 406,019 - HMPREF1058_RS11310 0.78 +0.7 406,030 - HMPREF1058_RS11310 0.79 -0.8 406,088 - HMPREF1058_RS11310 0.87 +2.3 406,200 - +1.9
Or see this region's nucleotide sequence