Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11310 and HMPREF1058_RS11305 are separated by 37 nucleotides HMPREF1058_RS11305 and HMPREF1058_RS11300 are separated by 12 nucleotides HMPREF1058_RS11300 and HMPREF1058_RS11295 are separated by 2 nucleotides
HMPREF1058_RS11310: HMPREF1058_RS11310 - undecaprenyl-diphosphate phosphatase, at 405,394 to 406,194
_RS11310
HMPREF1058_RS11305: HMPREF1058_RS11305 - DUF3098 domain-containing protein, at 406,232 to 406,477
_RS11305
HMPREF1058_RS11300: HMPREF1058_RS11300 - ABC transporter permease, at 406,490 to 407,359
_RS11300
HMPREF1058_RS11295: HMPREF1058_RS11295 - methyltransferase domain-containing protein, at 407,362 to 408,258
_RS11295
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.493 kb on - strand, within HMPREF1058_RS11310 at 405.500 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.548 kb on - strand, within HMPREF1058_RS11310 at 405.554 kb on - strand, within HMPREF1058_RS11310 at 405.556 kb on - strand, within HMPREF1058_RS11310 at 405.622 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 405.844 kb on - strand, within HMPREF1058_RS11310 at 406.016 kb on - strand, within HMPREF1058_RS11310 at 406.019 kb on - strand, within HMPREF1058_RS11310 at 406.030 kb on - strand, within HMPREF1058_RS11310 at 406.088 kb on - strand, within HMPREF1058_RS11310 at 406.200 kb on - strand at 406.478 kb on - strand at 406.486 kb on - strand at 406.486 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.501 kb on - strand at 406.528 kb on - strand at 406.544 kb on - strand at 406.544 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.546 kb on - strand at 406.622 kb on - strand, within HMPREF1058_RS11300 at 406.645 kb on - strand, within HMPREF1058_RS11300 at 406.650 kb on - strand, within HMPREF1058_RS11300 at 406.716 kb on - strand, within HMPREF1058_RS11300 at 406.823 kb on - strand, within HMPREF1058_RS11300 at 406.944 kb on - strand, within HMPREF1058_RS11300 at 407.115 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand at 407.117 kb on - strand, within HMPREF1058_RS11300 at 407.117 kb on - strand, within HMPREF1058_RS11300 at 407.233 kb on - strand, within HMPREF1058_RS11300 at 407.479 kb on - strand, within HMPREF1058_RS11295 at 407.481 kb on - strand, within HMPREF1058_RS11295 at 407.597 kb on - strand, within HMPREF1058_RS11295 at 407.616 kb on - strand, within HMPREF1058_RS11295 at 407.652 kb on - strand, within HMPREF1058_RS11295 at 407.935 kb on + strand, within HMPREF1058_RS11295 at 407.935 kb on + strand at 407.936 kb on - strand, within HMPREF1058_RS11295 at 407.978 kb on - strand, within HMPREF1058_RS11295 at 408.003 kb on + strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.026 kb on - strand, within HMPREF1058_RS11295 at 408.067 kb on - strand, within HMPREF1058_RS11295 at 408.069 kb on - strand at 408.084 kb on - strand, within HMPREF1058_RS11295 at 408.180 kb on - strand at 408.238 kb on - strand at 408.251 kb on - strand at 408.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 405,493 - HMPREF1058_RS11310 0.12 +1.0 405,500 - HMPREF1058_RS11310 0.13 +1.0 405,548 - HMPREF1058_RS11310 0.19 +2.6 405,548 - HMPREF1058_RS11310 0.19 -0.2 405,554 - HMPREF1058_RS11310 0.20 -1.3 405,556 - HMPREF1058_RS11310 0.20 -2.6 405,622 - HMPREF1058_RS11310 0.28 +0.5 405,844 - HMPREF1058_RS11310 0.56 +0.2 405,844 - HMPREF1058_RS11310 0.56 -0.2 405,844 - HMPREF1058_RS11310 0.56 -1.7 405,844 - HMPREF1058_RS11310 0.56 -1.4 406,016 - HMPREF1058_RS11310 0.78 -0.2 406,019 - HMPREF1058_RS11310 0.78 +0.7 406,030 - HMPREF1058_RS11310 0.79 -0.8 406,088 - HMPREF1058_RS11310 0.87 +2.3 406,200 - +1.9 406,478 - +0.2 406,486 - -0.4 406,486 - -0.0 406,501 - +1.4 406,501 - +0.4 406,501 - -0.4 406,528 - -0.3 406,544 - +0.7 406,544 - +0.1 406,546 - +0.6 406,546 - -0.5 406,546 - +0.4 406,546 - +0.6 406,546 - -0.1 406,622 - HMPREF1058_RS11300 0.15 +0.2 406,645 - HMPREF1058_RS11300 0.18 +0.5 406,650 - HMPREF1058_RS11300 0.18 +1.4 406,716 - HMPREF1058_RS11300 0.26 -0.1 406,823 - HMPREF1058_RS11300 0.38 +0.3 406,944 - HMPREF1058_RS11300 0.52 +0.2 407,115 - HMPREF1058_RS11300 0.72 +0.1 407,117 - +0.0 407,117 - HMPREF1058_RS11300 0.72 +1.3 407,117 - HMPREF1058_RS11300 0.72 -1.3 407,233 - HMPREF1058_RS11300 0.85 +0.5 407,479 - HMPREF1058_RS11295 0.13 -0.8 407,481 - HMPREF1058_RS11295 0.13 -0.4 407,597 - HMPREF1058_RS11295 0.26 -0.2 407,616 - HMPREF1058_RS11295 0.28 +0.1 407,652 - HMPREF1058_RS11295 0.32 -0.0 407,935 + HMPREF1058_RS11295 0.64 -1.1 407,935 + -0.9 407,936 - HMPREF1058_RS11295 0.64 +0.1 407,978 - HMPREF1058_RS11295 0.69 +0.2 408,003 + HMPREF1058_RS11295 0.71 -1.7 408,004 - HMPREF1058_RS11295 0.72 -0.3 408,004 - HMPREF1058_RS11295 0.72 +0.7 408,006 - HMPREF1058_RS11295 0.72 -0.0 408,006 - HMPREF1058_RS11295 0.72 -0.2 408,026 - HMPREF1058_RS11295 0.74 -0.5 408,067 - HMPREF1058_RS11295 0.79 -0.5 408,069 - -0.9 408,084 - HMPREF1058_RS11295 0.80 -0.6 408,180 - -0.4 408,238 - +0.9 408,251 - +0.3 408,327 - -0.3
Or see this region's nucleotide sequence