Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10945

Experiment: Vitafiber 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10950 and HMPREF1058_RS10945 are separated by 95 nucleotidesHMPREF1058_RS10945 and HMPREF1058_RS10940 are separated by 150 nucleotides HMPREF1058_RS10950: HMPREF1058_RS10950 - DUF2807 domain-containing protein, at 518,507 to 519,358 _RS10950 HMPREF1058_RS10945: HMPREF1058_RS10945 - tRNA dihydrouridine synthase DusB, at 519,454 to 520,443 _RS10945 HMPREF1058_RS10940: HMPREF1058_RS10940 - U32 family peptidase, at 520,594 to 521,856 _RS10940 Position (kb) 519 520 521Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 518.504 kb on - strandat 518.518 kb on - strandat 518.546 kb on - strandat 518.580 kb on + strandat 518.590 kb on + strandat 518.591 kb on - strandat 518.597 kb on + strand, within HMPREF1058_RS10950at 518.598 kb on - strand, within HMPREF1058_RS10950at 518.598 kb on - strand, within HMPREF1058_RS10950at 518.624 kb on - strand, within HMPREF1058_RS10950at 518.636 kb on - strand, within HMPREF1058_RS10950at 518.661 kb on + strand, within HMPREF1058_RS10950at 518.700 kb on + strand, within HMPREF1058_RS10950at 518.701 kb on - strand, within HMPREF1058_RS10950at 518.702 kb on + strand, within HMPREF1058_RS10950at 518.703 kb on - strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.728 kb on + strand, within HMPREF1058_RS10950at 518.755 kb on - strand, within HMPREF1058_RS10950at 518.796 kb on + strand, within HMPREF1058_RS10950at 518.809 kb on + strand, within HMPREF1058_RS10950at 518.809 kb on + strand, within HMPREF1058_RS10950at 518.875 kb on + strand, within HMPREF1058_RS10950at 518.876 kb on - strand, within HMPREF1058_RS10950at 518.880 kb on + strand, within HMPREF1058_RS10950at 518.911 kb on + strand, within HMPREF1058_RS10950at 518.941 kb on - strand, within HMPREF1058_RS10950at 518.987 kb on - strand, within HMPREF1058_RS10950at 519.060 kb on + strand, within HMPREF1058_RS10950at 519.091 kb on - strand, within HMPREF1058_RS10950at 519.134 kb on - strand, within HMPREF1058_RS10950at 519.191 kb on - strand, within HMPREF1058_RS10950at 519.191 kb on - strand, within HMPREF1058_RS10950at 519.208 kb on - strand, within HMPREF1058_RS10950at 519.208 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.296 kb on + strandat 519.296 kb on + strandat 519.375 kb on - strandat 519.375 kb on - strandat 519.382 kb on - strandat 519.384 kb on + strandat 519.384 kb on + strandat 519.432 kb on - strandat 519.432 kb on - strandat 519.437 kb on - strandat 519.437 kb on - strandat 519.439 kb on + strandat 519.439 kb on + strandat 519.439 kb on + strandat 519.450 kb on - strandat 519.483 kb on + strandat 519.485 kb on + strandat 519.485 kb on + strandat 519.485 kb on + strandat 519.537 kb on + strandat 519.567 kb on + strand, within HMPREF1058_RS10945at 519.661 kb on + strand, within HMPREF1058_RS10945at 519.713 kb on - strand, within HMPREF1058_RS10945at 519.713 kb on - strand, within HMPREF1058_RS10945at 519.713 kb on - strand, within HMPREF1058_RS10945at 519.715 kb on - strand, within HMPREF1058_RS10945at 519.716 kb on + strand, within HMPREF1058_RS10945at 519.716 kb on + strand, within HMPREF1058_RS10945at 519.717 kb on - strand, within HMPREF1058_RS10945at 519.717 kb on - strand, within HMPREF1058_RS10945at 519.771 kb on + strand, within HMPREF1058_RS10945at 519.781 kb on + strand, within HMPREF1058_RS10945at 519.823 kb on - strand, within HMPREF1058_RS10945at 519.826 kb on + strand, within HMPREF1058_RS10945at 519.826 kb on + strand, within HMPREF1058_RS10945at 519.827 kb on - strand, within HMPREF1058_RS10945at 519.827 kb on - strand, within HMPREF1058_RS10945at 519.827 kb on - strand, within HMPREF1058_RS10945at 519.846 kb on + strand, within HMPREF1058_RS10945at 519.850 kb on + strand, within HMPREF1058_RS10945at 519.850 kb on + strand, within HMPREF1058_RS10945at 519.850 kb on + strand, within HMPREF1058_RS10945at 519.850 kb on + strand, within HMPREF1058_RS10945at 519.853 kb on - strand, within HMPREF1058_RS10945at 519.884 kb on - strand, within HMPREF1058_RS10945at 519.884 kb on - strandat 519.912 kb on - strand, within HMPREF1058_RS10945at 519.968 kb on - strand, within HMPREF1058_RS10945at 519.986 kb on - strand, within HMPREF1058_RS10945at 519.990 kb on + strand, within HMPREF1058_RS10945at 519.990 kb on + strand, within HMPREF1058_RS10945at 520.101 kb on + strand, within HMPREF1058_RS10945at 520.202 kb on - strand, within HMPREF1058_RS10945at 520.329 kb on - strand, within HMPREF1058_RS10945at 520.331 kb on - strand, within HMPREF1058_RS10945at 520.331 kb on - strand, within HMPREF1058_RS10945at 520.331 kb on - strand, within HMPREF1058_RS10945at 520.381 kb on + strandat 520.426 kb on + strandat 520.428 kb on + strandat 520.429 kb on - strandat 520.449 kb on + strandat 520.449 kb on + strandat 520.450 kb on - strandat 520.450 kb on - strandat 520.494 kb on + strandat 520.575 kb on + strandat 520.576 kb on - strandat 520.577 kb on + strandat 520.577 kb on + strandat 520.578 kb on - strandat 520.578 kb on - strandat 520.687 kb on + strandat 520.795 kb on + strand, within HMPREF1058_RS10940at 520.809 kb on + strand, within HMPREF1058_RS10940at 520.915 kb on + strand, within HMPREF1058_RS10940at 520.915 kb on + strand, within HMPREF1058_RS10940at 520.916 kb on - strand, within HMPREF1058_RS10940at 520.941 kb on - strand, within HMPREF1058_RS10940at 520.941 kb on - strand, within HMPREF1058_RS10940at 520.958 kb on + strand, within HMPREF1058_RS10940at 520.962 kb on + strand, within HMPREF1058_RS10940at 520.963 kb on - strand, within HMPREF1058_RS10940at 521.009 kb on + strand, within HMPREF1058_RS10940at 521.009 kb on + strand, within HMPREF1058_RS10940at 521.056 kb on + strand, within HMPREF1058_RS10940at 521.057 kb on - strand, within HMPREF1058_RS10940at 521.057 kb on - strand, within HMPREF1058_RS10940at 521.061 kb on + strand, within HMPREF1058_RS10940at 521.061 kb on + strand, within HMPREF1058_RS10940at 521.208 kb on + strand, within HMPREF1058_RS10940at 521.208 kb on + strand, within HMPREF1058_RS10940at 521.216 kb on + strand, within HMPREF1058_RS10940at 521.216 kb on + strand, within HMPREF1058_RS10940at 521.216 kb on + strand, within HMPREF1058_RS10940at 521.230 kb on + strand, within HMPREF1058_RS10940at 521.277 kb on + strand, within HMPREF1058_RS10940at 521.281 kb on + strand, within HMPREF1058_RS10940at 521.282 kb on - strand, within HMPREF1058_RS10940at 521.282 kb on - strand, within HMPREF1058_RS10940at 521.282 kb on - strand, within HMPREF1058_RS10940at 521.282 kb on - strand, within HMPREF1058_RS10940at 521.282 kb on - strand, within HMPREF1058_RS10940at 521.310 kb on + strand, within HMPREF1058_RS10940at 521.310 kb on + strand, within HMPREF1058_RS10940at 521.334 kb on - strand, within HMPREF1058_RS10940at 521.390 kb on + strand, within HMPREF1058_RS10940at 521.390 kb on + strand, within HMPREF1058_RS10940at 521.391 kb on - strand, within HMPREF1058_RS10940at 521.410 kb on + strand, within HMPREF1058_RS10940at 521.431 kb on + strand, within HMPREF1058_RS10940

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Per-strain Table

Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C)
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518,504 - +0.4
518,518 - -0.5
518,546 - -0.3
518,580 + +0.5
518,590 + +0.4
518,591 - +0.0
518,597 + HMPREF1058_RS10950 0.11 +1.0
518,598 - HMPREF1058_RS10950 0.11 +0.2
518,598 - HMPREF1058_RS10950 0.11 -1.1
518,624 - HMPREF1058_RS10950 0.14 -0.2
518,636 - HMPREF1058_RS10950 0.15 +0.0
518,661 + HMPREF1058_RS10950 0.18 +0.2
518,700 + HMPREF1058_RS10950 0.23 -1.0
518,701 - HMPREF1058_RS10950 0.23 -0.6
518,702 + HMPREF1058_RS10950 0.23 +0.1
518,703 - HMPREF1058_RS10950 0.23 -0.4
518,726 + HMPREF1058_RS10950 0.26 -0.1
518,726 + HMPREF1058_RS10950 0.26 -1.3
518,726 + HMPREF1058_RS10950 0.26 +0.0
518,728 + HMPREF1058_RS10950 0.26 -0.6
518,755 - HMPREF1058_RS10950 0.29 +0.4
518,796 + HMPREF1058_RS10950 0.34 +0.2
518,809 + HMPREF1058_RS10950 0.35 +0.5
518,809 + HMPREF1058_RS10950 0.35 -0.0
518,875 + HMPREF1058_RS10950 0.43 -0.6
518,876 - HMPREF1058_RS10950 0.43 +0.4
518,880 + HMPREF1058_RS10950 0.44 +0.2
518,911 + HMPREF1058_RS10950 0.47 -0.4
518,941 - HMPREF1058_RS10950 0.51 +0.1
518,987 - HMPREF1058_RS10950 0.56 -0.3
519,060 + HMPREF1058_RS10950 0.65 +1.0
519,091 - HMPREF1058_RS10950 0.69 +0.2
519,134 - HMPREF1058_RS10950 0.74 -0.6
519,191 - HMPREF1058_RS10950 0.80 +0.8
519,191 - HMPREF1058_RS10950 0.80 -0.1
519,208 - HMPREF1058_RS10950 0.82 +0.2
519,208 - HMPREF1058_RS10950 0.82 -0.6
519,246 - HMPREF1058_RS10950 0.87 +1.4
519,246 - HMPREF1058_RS10950 0.87 +0.2
519,246 - HMPREF1058_RS10950 0.87 -0.6
519,296 + -0.3
519,296 + +0.5
519,375 - -0.2
519,375 - -0.7
519,382 - +0.3
519,384 + -1.8
519,384 + -0.3
519,432 - +0.3
519,432 - +0.2
519,437 - +0.2
519,437 - -0.4
519,439 + -0.6
519,439 + -0.6
519,439 + +0.6
519,450 - -0.8
519,483 + -0.3
519,485 + +0.0
519,485 + -1.2
519,485 + -0.5
519,537 + +1.2
519,567 + HMPREF1058_RS10945 0.11 +1.7
519,661 + HMPREF1058_RS10945 0.21 +1.8
519,713 - HMPREF1058_RS10945 0.26 +1.8
519,713 - HMPREF1058_RS10945 0.26 +2.1
519,713 - HMPREF1058_RS10945 0.26 +0.8
519,715 - HMPREF1058_RS10945 0.26 +0.9
519,716 + HMPREF1058_RS10945 0.26 +1.9
519,716 + HMPREF1058_RS10945 0.26 +2.0
519,717 - HMPREF1058_RS10945 0.27 +2.1
519,717 - HMPREF1058_RS10945 0.27 +2.4
519,771 + HMPREF1058_RS10945 0.32 +2.4
519,781 + HMPREF1058_RS10945 0.33 +1.8
519,823 - HMPREF1058_RS10945 0.37 +2.1
519,826 + HMPREF1058_RS10945 0.38 +2.1
519,826 + HMPREF1058_RS10945 0.38 +1.9
519,827 - HMPREF1058_RS10945 0.38 +1.5
519,827 - HMPREF1058_RS10945 0.38 +1.6
519,827 - HMPREF1058_RS10945 0.38 +1.6
519,846 + HMPREF1058_RS10945 0.40 -0.1
519,850 + HMPREF1058_RS10945 0.40 +2.6
519,850 + HMPREF1058_RS10945 0.40 +1.8
519,850 + HMPREF1058_RS10945 0.40 +1.8
519,850 + HMPREF1058_RS10945 0.40 +1.7
519,853 - HMPREF1058_RS10945 0.40 +2.2
519,884 - HMPREF1058_RS10945 0.43 +1.3
519,884 - +1.5
519,912 - HMPREF1058_RS10945 0.46 +1.7
519,968 - HMPREF1058_RS10945 0.52 +2.5
519,986 - HMPREF1058_RS10945 0.54 +1.5
519,990 + HMPREF1058_RS10945 0.54 +2.6
519,990 + HMPREF1058_RS10945 0.54 +1.1
520,101 + HMPREF1058_RS10945 0.65 +1.4
520,202 - HMPREF1058_RS10945 0.76 +2.3
520,329 - HMPREF1058_RS10945 0.88 +1.9
520,331 - HMPREF1058_RS10945 0.89 +2.2
520,331 - HMPREF1058_RS10945 0.89 -0.1
520,331 - HMPREF1058_RS10945 0.89 +2.4
520,381 + +0.8
520,426 + +1.8
520,428 + +2.7
520,429 - +1.6
520,449 + +0.5
520,449 + +1.4
520,450 - -1.0
520,450 - +0.1
520,494 + +2.7
520,575 + +0.6
520,576 - -0.6
520,577 + -0.0
520,577 + +0.7
520,578 - +0.3
520,578 - -1.1
520,687 + -1.1
520,795 + HMPREF1058_RS10940 0.16 -1.4
520,809 + HMPREF1058_RS10940 0.17 -0.3
520,915 + HMPREF1058_RS10940 0.25 -2.0
520,915 + HMPREF1058_RS10940 0.25 -1.1
520,916 - HMPREF1058_RS10940 0.25 -1.9
520,941 - HMPREF1058_RS10940 0.27 -3.3
520,941 - HMPREF1058_RS10940 0.27 -0.0
520,958 + HMPREF1058_RS10940 0.29 -1.3
520,962 + HMPREF1058_RS10940 0.29 -2.0
520,963 - HMPREF1058_RS10940 0.29 -1.2
521,009 + HMPREF1058_RS10940 0.33 -1.2
521,009 + HMPREF1058_RS10940 0.33 -0.8
521,056 + HMPREF1058_RS10940 0.37 -1.8
521,057 - HMPREF1058_RS10940 0.37 -1.1
521,057 - HMPREF1058_RS10940 0.37 -1.4
521,061 + HMPREF1058_RS10940 0.37 -2.5
521,061 + HMPREF1058_RS10940 0.37 -1.0
521,208 + HMPREF1058_RS10940 0.49 -1.6
521,208 + HMPREF1058_RS10940 0.49 +0.0
521,216 + HMPREF1058_RS10940 0.49 +0.4
521,216 + HMPREF1058_RS10940 0.49 -1.2
521,216 + HMPREF1058_RS10940 0.49 +0.3
521,230 + HMPREF1058_RS10940 0.50 -0.9
521,277 + HMPREF1058_RS10940 0.54 +0.7
521,281 + HMPREF1058_RS10940 0.54 -0.9
521,282 - HMPREF1058_RS10940 0.54 -1.4
521,282 - HMPREF1058_RS10940 0.54 -0.9
521,282 - HMPREF1058_RS10940 0.54 +0.7
521,282 - HMPREF1058_RS10940 0.54 -1.8
521,282 - HMPREF1058_RS10940 0.54 -1.8
521,310 + HMPREF1058_RS10940 0.57 -0.7
521,310 + HMPREF1058_RS10940 0.57 -1.2
521,334 - HMPREF1058_RS10940 0.59 -1.8
521,390 + HMPREF1058_RS10940 0.63 -2.1
521,390 + HMPREF1058_RS10940 0.63 -1.4
521,391 - HMPREF1058_RS10940 0.63 -0.8
521,410 + HMPREF1058_RS10940 0.65 -1.1
521,431 + HMPREF1058_RS10940 0.66 -1.7

Or see this region's nucleotide sequence