Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09600 and HMPREF1058_RS09595 are separated by 99 nucleotides HMPREF1058_RS09595 and HMPREF1058_RS09590 are separated by 97 nucleotides HMPREF1058_RS09590 and HMPREF1058_RS09585 are separated by 14 nucleotides
HMPREF1058_RS09600: HMPREF1058_RS09600 - ComF family protein, at 838,906 to 839,601
_RS09600
HMPREF1058_RS09595: HMPREF1058_RS09595 - orotate phosphoribosyltransferase, at 839,701 to 840,339
_RS09595
HMPREF1058_RS09590: HMPREF1058_RS09590 - hypothetical protein, at 840,437 to 840,841
_RS09590
HMPREF1058_RS09585: HMPREF1058_RS09585 - argininosuccinate lyase, at 840,856 to 842,196
_RS09585
Position (kb) 840
841 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 839.514 kb on + strand, within HMPREF1058_RS09600 at 839.558 kb on + strand at 839.574 kb on + strand at 840.145 kb on - strand, within HMPREF1058_RS09595 at 840.337 kb on + strand at 840.359 kb on + strand at 840.360 kb on - strand at 840.361 kb on + strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.465 kb on - strand at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.510 kb on + strand, within HMPREF1058_RS09590 at 840.528 kb on + strand, within HMPREF1058_RS09590 at 840.553 kb on - strand, within HMPREF1058_RS09590 at 840.559 kb on + strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.640 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.757 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.855 kb on + strand at 840.903 kb on - strand at 840.944 kb on - strand at 840.962 kb on + strand at 840.962 kb on + strand at 840.982 kb on - strand at 840.999 kb on + strand, within HMPREF1058_RS09585 at 841.035 kb on - strand, within HMPREF1058_RS09585 at 841.046 kb on + strand, within HMPREF1058_RS09585 at 841.053 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.058 kb on - strand, within HMPREF1058_RS09585 at 841.109 kb on + strand, within HMPREF1058_RS09585 at 841.110 kb on - strand, within HMPREF1058_RS09585 at 841.121 kb on + strand, within HMPREF1058_RS09585 at 841.219 kb on - strand, within HMPREF1058_RS09585 at 841.290 kb on + strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.526 kb on - strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.558 kb on - strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.696 kb on - strand, within HMPREF1058_RS09585 at 841.697 kb on + strand, within HMPREF1058_RS09585 at 841.832 kb on + strand, within HMPREF1058_RS09585
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 839,514 + HMPREF1058_RS09600 0.87 -0.8 839,558 + +1.1 839,574 + -0.3 840,145 - HMPREF1058_RS09595 0.69 -0.7 840,337 + -1.0 840,359 + +0.6 840,360 - -6.0 840,361 + +0.1 840,464 + +1.5 840,465 - +0.0 840,465 - -3.6 840,497 - HMPREF1058_RS09590 0.15 -1.9 840,497 - HMPREF1058_RS09590 0.15 -3.4 840,510 + HMPREF1058_RS09590 0.18 +1.1 840,528 + HMPREF1058_RS09590 0.22 +0.5 840,553 - HMPREF1058_RS09590 0.29 -1.4 840,559 + HMPREF1058_RS09590 0.30 +3.4 840,595 - HMPREF1058_RS09590 0.39 -3.3 840,595 - HMPREF1058_RS09590 0.39 -1.9 840,640 + HMPREF1058_RS09590 0.50 +0.2 840,739 + HMPREF1058_RS09590 0.75 +0.8 840,739 + HMPREF1058_RS09590 0.75 +0.0 840,757 + HMPREF1058_RS09590 0.79 +1.3 840,763 + HMPREF1058_RS09590 0.80 +0.9 840,763 + HMPREF1058_RS09590 0.80 +0.7 840,763 + HMPREF1058_RS09590 0.80 +1.1 840,855 + -3.5 840,903 - -0.6 840,944 - -4.2 840,962 + -2.8 840,962 + -5.7 840,982 - -2.6 840,999 + HMPREF1058_RS09585 0.11 -4.8 841,035 - HMPREF1058_RS09585 0.13 -2.8 841,046 + HMPREF1058_RS09585 0.14 -2.5 841,053 + HMPREF1058_RS09585 0.15 -2.9 841,057 + HMPREF1058_RS09585 0.15 -5.7 841,057 + HMPREF1058_RS09585 0.15 -6.2 841,057 + HMPREF1058_RS09585 0.15 -4.2 841,057 + HMPREF1058_RS09585 0.15 -3.6 841,058 - HMPREF1058_RS09585 0.15 -1.6 841,109 + HMPREF1058_RS09585 0.19 -3.6 841,110 - HMPREF1058_RS09585 0.19 -2.4 841,121 + HMPREF1058_RS09585 0.20 -4.2 841,219 - HMPREF1058_RS09585 0.27 -1.5 841,290 + HMPREF1058_RS09585 0.32 -3.1 841,291 - HMPREF1058_RS09585 0.32 -4.4 841,291 - HMPREF1058_RS09585 0.32 -6.1 841,294 + HMPREF1058_RS09585 0.33 -3.3 841,294 + HMPREF1058_RS09585 0.33 -1.1 841,295 - HMPREF1058_RS09585 0.33 -5.3 841,295 - HMPREF1058_RS09585 0.33 -2.7 841,295 - HMPREF1058_RS09585 0.33 -4.3 841,296 + HMPREF1058_RS09585 0.33 -6.4 841,296 + HMPREF1058_RS09585 0.33 -4.3 841,296 + HMPREF1058_RS09585 0.33 -2.5 841,297 - HMPREF1058_RS09585 0.33 -1.6 841,297 - HMPREF1058_RS09585 0.33 -5.1 841,526 - HMPREF1058_RS09585 0.50 -3.7 841,527 + HMPREF1058_RS09585 0.50 -3.6 841,527 + HMPREF1058_RS09585 0.50 -5.1 841,527 + HMPREF1058_RS09585 0.50 -4.2 841,528 - HMPREF1058_RS09585 0.50 -4.4 841,528 - HMPREF1058_RS09585 0.50 -2.7 841,537 + HMPREF1058_RS09585 0.51 -6.1 841,537 + HMPREF1058_RS09585 0.51 -4.0 841,558 - HMPREF1058_RS09585 0.52 -3.5 841,632 + HMPREF1058_RS09585 0.58 -1.7 841,632 + HMPREF1058_RS09585 0.58 -2.4 841,696 - HMPREF1058_RS09585 0.63 -3.9 841,697 + HMPREF1058_RS09585 0.63 -2.6 841,832 + HMPREF1058_RS09585 0.73 -5.0
Or see this region's nucleotide sequence