Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08775

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
1,037,376	+		HMPREF1058_RS08780	0.41	-1.1
1,037,376	+		HMPREF1058_RS08780	0.41	-0.6
1,037,377	-		HMPREF1058_RS08780	0.42	-1.5
1,037,408	+		HMPREF1058_RS08780	0.44	-0.8
1,037,539	+		HMPREF1058_RS08780	0.52	-0.2
1,037,544	+		HMPREF1058_RS08780	0.52	-1.2
1,037,548	+		HMPREF1058_RS08780	0.53	-1.8
1,037,642	+		HMPREF1058_RS08780	0.59	-0.9
1,037,747	+		HMPREF1058_RS08780	0.66	-1.0
1,037,748	-		HMPREF1058_RS08780	0.66	-1.0
1,037,926	-		HMPREF1058_RS08780	0.77	-1.9
1,037,959	+		HMPREF1058_RS08780	0.80	-1.8
1,037,959	+		HMPREF1058_RS08780	0.80	-0.4
1,037,959	+		HMPREF1058_RS08780	0.80	-0.8
1,037,960	-		HMPREF1058_RS08780	0.80	-2.4
1,038,047	+		HMPREF1058_RS08780	0.85	-0.9
1,038,047	+				-0.7
1,038,067	+		HMPREF1058_RS08780	0.87	-0.6
1,038,107	+		HMPREF1058_RS08780	0.89	-0.8
1,038,123	-				-0.5
1,038,150	-				-1.0
1,038,230	+				-0.8
1,038,235	-				-1.1
1,038,235	-				-2.1
1,038,497	+		HMPREF1058_RS08775	0.50	-0.2
1,038,547	+		HMPREF1058_RS08775	0.62	+1.3
1,038,630	-		HMPREF1058_RS08775	0.82	+1.0
1,038,630	-		HMPREF1058_RS08775	0.82	+1.9
1,038,653	-		HMPREF1058_RS08775	0.87	+0.3
1,038,749	+				+0.7
1,038,787	+				+0.1
1,038,787	+				+0.9
1,038,788	-				+0.3
1,038,964	+		HMPREF1058_RS08770	0.14	+1.1
1,038,992	+		HMPREF1058_RS08770	0.19	+0.1
1,039,021	+		HMPREF1058_RS08770	0.25	+0.4
1,039,022	-		HMPREF1058_RS08770	0.25	-1.3
1,039,059	-		HMPREF1058_RS08770	0.32	-0.2
1,039,078	-		HMPREF1058_RS08770	0.35	-0.0
1,039,080	+		HMPREF1058_RS08770	0.35	+0.0
1,039,099	+		HMPREF1058_RS08770	0.39	+0.7
1,039,099	+		HMPREF1058_RS08770	0.39	+1.2
1,039,099	+		HMPREF1058_RS08770	0.39	+0.8
1,039,166	-		HMPREF1058_RS08770	0.51	-1.3
1,039,169	+		HMPREF1058_RS08770	0.51	+0.3
1,039,170	-		HMPREF1058_RS08770	0.52	-0.1
1,039,201	+		HMPREF1058_RS08770	0.57	+0.4
1,039,316	-		HMPREF1058_RS08770	0.78	+0.8
1,039,319	-		HMPREF1058_RS08770	0.78	-0.1
1,039,320	+		HMPREF1058_RS08770	0.79	+1.1
1,039,321	-		HMPREF1058_RS08770	0.79	+0.7
1,039,387	+				-0.1
1,039,487	-				+0.1
1,039,623	+				-0.5
1,039,624	-				+0.3
1,039,624	-				-0.3
1,039,625	+				-1.1
1,039,625	+				+0.1
1,039,625	+				-0.3
1,039,626	-				-0.6
1,039,671	-				+0.2
1,039,684	-				-0.1
1,039,697	+		HMPREF1058_RS08765	0.11	-0.0
1,039,697	+		HMPREF1058_RS08765	0.11	+0.1
1,039,697	+		HMPREF1058_RS08765	0.11	-0.3
1,039,698	-		HMPREF1058_RS08765	0.11	-0.4
1,039,698	-		HMPREF1058_RS08765	0.11	-0.1
1,039,698	-		HMPREF1058_RS08765	0.11	-2.0
1,039,702	+		HMPREF1058_RS08765	0.11	-1.2
1,039,702	+		HMPREF1058_RS08765	0.11	-0.3
1,039,702	+		HMPREF1058_RS08765	0.11	-0.5
1,039,703	-		HMPREF1058_RS08765	0.11	+0.4
1,039,703	-		HMPREF1058_RS08765	0.11	-0.5
1,039,703	-		HMPREF1058_RS08765	0.11	+0.8
1,039,704	+		HMPREF1058_RS08765	0.11	+0.8
1,039,704	+		HMPREF1058_RS08765	0.11	+0.4
1,039,704	+		HMPREF1058_RS08765	0.11	+0.6
1,039,705	-		HMPREF1058_RS08765	0.11	-0.3
1,039,705	-		HMPREF1058_RS08765	0.11	-0.2
1,039,705	-		HMPREF1058_RS08765	0.11	+3.2
1,039,705	-		HMPREF1058_RS08765	0.11	-0.6
1,039,705	-		HMPREF1058_RS08765	0.11	+1.0