Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07975 and HMPREF1058_RS07970 are separated by 286 nucleotides HMPREF1058_RS07970 and HMPREF1058_RS07965 overlap by 4 nucleotides HMPREF1058_RS07965 and HMPREF1058_RS07960 are separated by 4 nucleotides
HMPREF1058_RS07975: HMPREF1058_RS07975 - family 10 glycosylhydrolase, at 86,306 to 87,805
_RS07975
HMPREF1058_RS07970: HMPREF1058_RS07970 - chromate transporter, at 88,092 to 88,664
_RS07970
HMPREF1058_RS07965: HMPREF1058_RS07965 - chromate transporter, at 88,661 to 89,209
_RS07965
HMPREF1058_RS07960: HMPREF1058_RS07960 - response regulator, at 89,214 to 93,230
_RS07960
Position (kb) 88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 87.705 kb on + strand at 87.706 kb on - strand at 87.711 kb on - strand at 87.738 kb on - strand at 87.863 kb on + strand at 87.863 kb on + strand at 87.864 kb on - strand at 87.865 kb on + strand at 87.941 kb on + strand at 87.941 kb on + strand at 87.941 kb on + strand at 87.943 kb on + strand at 87.944 kb on - strand at 88.004 kb on - strand at 88.008 kb on - strand at 88.125 kb on + strand at 88.125 kb on + strand at 88.126 kb on - strand at 88.134 kb on + strand at 88.140 kb on - strand at 88.167 kb on + strand, within HMPREF1058_RS07970 at 88.167 kb on + strand, within HMPREF1058_RS07970 at 88.168 kb on - strand, within HMPREF1058_RS07970 at 88.194 kb on - strand, within HMPREF1058_RS07970 at 88.218 kb on + strand, within HMPREF1058_RS07970 at 88.282 kb on - strand, within HMPREF1058_RS07970 at 88.362 kb on + strand, within HMPREF1058_RS07970 at 88.363 kb on - strand, within HMPREF1058_RS07970 at 88.369 kb on - strand, within HMPREF1058_RS07970 at 88.400 kb on + strand, within HMPREF1058_RS07970 at 88.400 kb on + strand, within HMPREF1058_RS07970 at 88.405 kb on - strand, within HMPREF1058_RS07970 at 88.405 kb on - strand, within HMPREF1058_RS07970 at 88.419 kb on + strand, within HMPREF1058_RS07970 at 88.422 kb on - strand, within HMPREF1058_RS07970 at 88.439 kb on - strand, within HMPREF1058_RS07970 at 88.439 kb on - strand, within HMPREF1058_RS07970 at 88.471 kb on + strand, within HMPREF1058_RS07970 at 88.472 kb on - strand, within HMPREF1058_RS07970 at 88.475 kb on + strand, within HMPREF1058_RS07970 at 88.557 kb on - strand, within HMPREF1058_RS07970 at 88.581 kb on + strand, within HMPREF1058_RS07970 at 88.626 kb on + strand at 88.627 kb on - strand at 88.647 kb on + strand at 88.674 kb on + strand at 88.679 kb on - strand at 88.697 kb on + strand at 88.697 kb on + strand at 88.698 kb on - strand at 88.698 kb on - strand at 88.700 kb on - strand at 88.721 kb on + strand, within HMPREF1058_RS07965 at 88.775 kb on + strand, within HMPREF1058_RS07965 at 88.776 kb on - strand, within HMPREF1058_RS07965 at 88.776 kb on - strand, within HMPREF1058_RS07965 at 88.794 kb on + strand, within HMPREF1058_RS07965 at 88.877 kb on + strand, within HMPREF1058_RS07965 at 88.877 kb on + strand, within HMPREF1058_RS07965 at 88.878 kb on - strand, within HMPREF1058_RS07965 at 88.879 kb on + strand, within HMPREF1058_RS07965 at 88.935 kb on - strand, within HMPREF1058_RS07965 at 88.955 kb on + strand, within HMPREF1058_RS07965 at 88.956 kb on - strand, within HMPREF1058_RS07965 at 89.002 kb on + strand, within HMPREF1058_RS07965 at 89.023 kb on + strand, within HMPREF1058_RS07965 at 89.037 kb on - strand, within HMPREF1058_RS07965 at 89.066 kb on + strand, within HMPREF1058_RS07965 at 89.159 kb on - strand at 89.162 kb on + strand at 89.168 kb on + strand at 89.183 kb on - strand at 89.228 kb on + strand at 89.262 kb on - strand at 89.262 kb on - strand at 89.326 kb on + strand at 89.344 kb on - strand at 89.364 kb on - strand at 89.367 kb on + strand at 89.418 kb on - strand at 89.424 kb on + strand at 89.424 kb on + strand at 89.430 kb on - strand at 89.430 kb on - strand at 89.441 kb on + strand at 89.457 kb on + strand at 89.487 kb on - strand at 89.496 kb on + strand at 89.557 kb on - strand at 89.643 kb on + strand, within HMPREF1058_RS07960 at 89.667 kb on + strand, within HMPREF1058_RS07960 at 89.672 kb on - strand, within HMPREF1058_RS07960 at 89.702 kb on + strand, within HMPREF1058_RS07960 at 89.742 kb on - strand, within HMPREF1058_RS07960 at 89.742 kb on - strand at 89.742 kb on - strand, within HMPREF1058_RS07960 at 89.746 kb on - strand at 89.746 kb on - strand, within HMPREF1058_RS07960 at 89.747 kb on + strand, within HMPREF1058_RS07960 at 89.747 kb on + strand, within HMPREF1058_RS07960 at 89.747 kb on + strand, within HMPREF1058_RS07960 at 89.747 kb on + strand, within HMPREF1058_RS07960 at 89.748 kb on - strand, within HMPREF1058_RS07960 at 89.775 kb on + strand, within HMPREF1058_RS07960 at 89.778 kb on - strand, within HMPREF1058_RS07960 at 89.880 kb on + strand at 89.912 kb on + strand, within HMPREF1058_RS07960 at 89.912 kb on + strand, within HMPREF1058_RS07960 at 89.912 kb on + strand, within HMPREF1058_RS07960 at 89.913 kb on - strand, within HMPREF1058_RS07960 at 89.913 kb on - strand, within HMPREF1058_RS07960 at 89.943 kb on - strand, within HMPREF1058_RS07960 at 89.943 kb on - strand, within HMPREF1058_RS07960 at 90.049 kb on - strand, within HMPREF1058_RS07960 at 90.068 kb on + strand, within HMPREF1058_RS07960 at 90.068 kb on + strand, within HMPREF1058_RS07960 at 90.068 kb on + strand, within HMPREF1058_RS07960 at 90.068 kb on + strand, within HMPREF1058_RS07960 at 90.069 kb on - strand, within HMPREF1058_RS07960 at 90.069 kb on - strand, within HMPREF1058_RS07960 at 90.117 kb on - strand, within HMPREF1058_RS07960 at 90.132 kb on + strand, within HMPREF1058_RS07960 at 90.134 kb on + strand, within HMPREF1058_RS07960 at 90.178 kb on + strand, within HMPREF1058_RS07960 at 90.178 kb on + strand, within HMPREF1058_RS07960 at 90.179 kb on - strand, within HMPREF1058_RS07960 at 90.183 kb on - strand, within HMPREF1058_RS07960
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 87,705 + +0.6 87,706 - -0.8 87,711 - +0.5 87,738 - +0.2 87,863 + +0.2 87,863 + +1.3 87,864 - -0.6 87,865 + +0.5 87,941 + -0.4 87,941 + -2.0 87,941 + -0.3 87,943 + +0.5 87,944 - -0.8 88,004 - +0.2 88,008 - +0.1 88,125 + -0.7 88,125 + +1.4 88,126 - +0.2 88,134 + -0.8 88,140 - -0.9 88,167 + HMPREF1058_RS07970 0.13 -1.1 88,167 + HMPREF1058_RS07970 0.13 -0.4 88,168 - HMPREF1058_RS07970 0.13 +0.0 88,194 - HMPREF1058_RS07970 0.18 -1.4 88,218 + HMPREF1058_RS07970 0.22 -0.4 88,282 - HMPREF1058_RS07970 0.33 +0.7 88,362 + HMPREF1058_RS07970 0.47 +1.3 88,363 - HMPREF1058_RS07970 0.47 -0.3 88,369 - HMPREF1058_RS07970 0.48 -0.5 88,400 + HMPREF1058_RS07970 0.54 -0.7 88,400 + HMPREF1058_RS07970 0.54 -0.5 88,405 - HMPREF1058_RS07970 0.55 -0.2 88,405 - HMPREF1058_RS07970 0.55 -0.8 88,419 + HMPREF1058_RS07970 0.57 -0.8 88,422 - HMPREF1058_RS07970 0.58 -1.4 88,439 - HMPREF1058_RS07970 0.61 -0.1 88,439 - HMPREF1058_RS07970 0.61 -1.0 88,471 + HMPREF1058_RS07970 0.66 +1.8 88,472 - HMPREF1058_RS07970 0.66 -0.8 88,475 + HMPREF1058_RS07970 0.67 -0.0 88,557 - HMPREF1058_RS07970 0.81 -2.2 88,581 + HMPREF1058_RS07970 0.85 +0.1 88,626 + +1.9 88,627 - -0.1 88,647 + +1.0 88,674 + +0.1 88,679 - +0.4 88,697 + -1.6 88,697 + +0.4 88,698 - +2.0 88,698 - +0.7 88,700 - -0.5 88,721 + HMPREF1058_RS07965 0.11 -1.2 88,775 + HMPREF1058_RS07965 0.21 +0.8 88,776 - HMPREF1058_RS07965 0.21 -1.1 88,776 - HMPREF1058_RS07965 0.21 -0.5 88,794 + HMPREF1058_RS07965 0.24 +0.9 88,877 + HMPREF1058_RS07965 0.39 +1.4 88,877 + HMPREF1058_RS07965 0.39 +1.7 88,878 - HMPREF1058_RS07965 0.40 +0.4 88,879 + HMPREF1058_RS07965 0.40 +0.5 88,935 - HMPREF1058_RS07965 0.50 -0.2 88,955 + HMPREF1058_RS07965 0.54 +0.2 88,956 - HMPREF1058_RS07965 0.54 +0.5 89,002 + HMPREF1058_RS07965 0.62 +2.0 89,023 + HMPREF1058_RS07965 0.66 +1.0 89,037 - HMPREF1058_RS07965 0.68 -0.4 89,066 + HMPREF1058_RS07965 0.74 +1.0 89,159 - +1.0 89,162 + +1.8 89,168 + +2.8 89,183 - +1.2 89,228 + +1.2 89,262 - +3.2 89,262 - +3.0 89,326 + -0.2 89,344 - +3.4 89,364 - +2.4 89,367 + +0.9 89,418 - +2.4 89,424 + +1.2 89,424 + +2.3 89,430 - +2.5 89,430 - +3.1 89,441 + +2.8 89,457 + +3.4 89,487 - +2.7 89,496 + +2.5 89,557 - +1.2 89,643 + HMPREF1058_RS07960 0.11 +3.3 89,667 + HMPREF1058_RS07960 0.11 +1.8 89,672 - HMPREF1058_RS07960 0.11 +1.9 89,702 + HMPREF1058_RS07960 0.12 +2.6 89,742 - HMPREF1058_RS07960 0.13 +2.5 89,742 - +2.8 89,742 - HMPREF1058_RS07960 0.13 +0.0 89,746 - +4.2 89,746 - HMPREF1058_RS07960 0.13 +0.6 89,747 + HMPREF1058_RS07960 0.13 +2.1 89,747 + HMPREF1058_RS07960 0.13 +2.4 89,747 + HMPREF1058_RS07960 0.13 +2.4 89,747 + HMPREF1058_RS07960 0.13 +1.4 89,748 - HMPREF1058_RS07960 0.13 +2.3 89,775 + HMPREF1058_RS07960 0.14 +1.1 89,778 - HMPREF1058_RS07960 0.14 +4.6 89,880 + -0.4 89,912 + HMPREF1058_RS07960 0.17 +0.2 89,912 + HMPREF1058_RS07960 0.17 +5.9 89,912 + HMPREF1058_RS07960 0.17 +2.0 89,913 - HMPREF1058_RS07960 0.17 +2.9 89,913 - HMPREF1058_RS07960 0.17 +2.4 89,943 - HMPREF1058_RS07960 0.18 +3.8 89,943 - HMPREF1058_RS07960 0.18 +4.0 90,049 - HMPREF1058_RS07960 0.21 +3.3 90,068 + HMPREF1058_RS07960 0.21 +2.3 90,068 + HMPREF1058_RS07960 0.21 +2.6 90,068 + HMPREF1058_RS07960 0.21 +2.6 90,068 + HMPREF1058_RS07960 0.21 +1.2 90,069 - HMPREF1058_RS07960 0.21 +3.2 90,069 - HMPREF1058_RS07960 0.21 +2.5 90,117 - HMPREF1058_RS07960 0.22 +2.3 90,132 + HMPREF1058_RS07960 0.23 +1.2 90,134 + HMPREF1058_RS07960 0.23 +0.6 90,178 + HMPREF1058_RS07960 0.24 +2.4 90,178 + HMPREF1058_RS07960 0.24 +1.2 90,179 - HMPREF1058_RS07960 0.24 +2.3 90,183 - HMPREF1058_RS07960 0.24 -1.3
Or see this region's nucleotide sequence