Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06800 and HMPREF1058_RS06795 are separated by 143 nucleotides HMPREF1058_RS06795 and HMPREF1058_RS06790 are separated by 3 nucleotides HMPREF1058_RS06790 and HMPREF1058_RS06785 overlap by 4 nucleotides
HMPREF1058_RS06800: HMPREF1058_RS06800 - response regulator, at 393,890 to 395,740
_RS06800
HMPREF1058_RS06795: HMPREF1058_RS06795 - response regulator, at 395,884 to 396,240
_RS06795
HMPREF1058_RS06790: HMPREF1058_RS06790 - glycosyltransferase family 2 protein, at 396,244 to 397,449
_RS06790
HMPREF1058_RS06785: HMPREF1058_RS06785 - glycosyltransferase family 4 protein, at 397,446 to 398,564
_RS06785
Position (kb) 396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 395.265 kb on + strand, within HMPREF1058_RS06800 at 395.302 kb on - strand, within HMPREF1058_RS06800 at 395.302 kb on - strand, within HMPREF1058_RS06800 at 395.316 kb on - strand, within HMPREF1058_RS06800 at 395.452 kb on - strand, within HMPREF1058_RS06800 at 395.455 kb on - strand, within HMPREF1058_RS06800 at 395.455 kb on - strand, within HMPREF1058_RS06800 at 395.477 kb on + strand, within HMPREF1058_RS06800 at 395.478 kb on - strand, within HMPREF1058_RS06800 at 395.484 kb on + strand, within HMPREF1058_RS06800 at 395.535 kb on + strand, within HMPREF1058_RS06800 at 395.566 kb on - strand at 395.574 kb on - strand at 395.575 kb on + strand at 395.575 kb on + strand at 395.576 kb on - strand at 395.586 kb on - strand at 395.590 kb on + strand at 395.591 kb on - strand at 395.656 kb on - strand at 395.668 kb on + strand at 395.671 kb on + strand at 395.672 kb on - strand at 395.672 kb on - strand at 395.722 kb on + strand at 395.723 kb on - strand at 395.741 kb on - strand at 395.743 kb on + strand at 395.744 kb on - strand at 395.746 kb on + strand at 395.764 kb on - strand at 395.818 kb on - strand at 395.838 kb on - strand at 395.845 kb on + strand at 395.920 kb on - strand, within HMPREF1058_RS06795 at 395.931 kb on - strand, within HMPREF1058_RS06795 at 396.038 kb on + strand, within HMPREF1058_RS06795 at 396.038 kb on + strand, within HMPREF1058_RS06795 at 396.111 kb on - strand, within HMPREF1058_RS06795 at 396.175 kb on + strand, within HMPREF1058_RS06795 at 396.175 kb on + strand, within HMPREF1058_RS06795 at 396.176 kb on - strand, within HMPREF1058_RS06795 at 396.176 kb on - strand, within HMPREF1058_RS06795 at 396.243 kb on - strand at 396.346 kb on - strand at 396.348 kb on - strand at 396.546 kb on - strand, within HMPREF1058_RS06790 at 396.683 kb on + strand, within HMPREF1058_RS06790 at 396.698 kb on + strand, within HMPREF1058_RS06790 at 396.699 kb on - strand, within HMPREF1058_RS06790 at 396.699 kb on - strand, within HMPREF1058_RS06790 at 396.699 kb on - strand, within HMPREF1058_RS06790 at 396.708 kb on + strand, within HMPREF1058_RS06790 at 396.709 kb on - strand, within HMPREF1058_RS06790 at 396.742 kb on - strand, within HMPREF1058_RS06790 at 396.760 kb on - strand, within HMPREF1058_RS06790 at 396.780 kb on - strand, within HMPREF1058_RS06790 at 396.782 kb on - strand, within HMPREF1058_RS06790 at 396.866 kb on + strand, within HMPREF1058_RS06790 at 396.876 kb on - strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.914 kb on + strand, within HMPREF1058_RS06790 at 396.915 kb on - strand, within HMPREF1058_RS06790 at 396.915 kb on - strand, within HMPREF1058_RS06790 at 396.915 kb on - strand, within HMPREF1058_RS06790 at 397.002 kb on + strand, within HMPREF1058_RS06790 at 397.024 kb on + strand, within HMPREF1058_RS06790 at 397.248 kb on - strand, within HMPREF1058_RS06790 at 397.400 kb on + strand at 397.401 kb on - strand at 397.401 kb on - strand at 397.455 kb on + strand at 397.465 kb on + strand at 397.467 kb on + strand at 397.468 kb on - strand at 397.528 kb on + strand at 397.732 kb on + strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.734 kb on + strand, within HMPREF1058_RS06785 at 397.736 kb on + strand, within HMPREF1058_RS06785 at 397.910 kb on - strand, within HMPREF1058_RS06785 at 397.929 kb on + strand, within HMPREF1058_RS06785 at 397.958 kb on + strand, within HMPREF1058_RS06785 at 397.992 kb on + strand, within HMPREF1058_RS06785 at 397.992 kb on + strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 398.057 kb on - strand, within HMPREF1058_RS06785 at 398.240 kb on + strand, within HMPREF1058_RS06785 at 398.256 kb on - strand, within HMPREF1058_RS06785 at 398.350 kb on - strand, within HMPREF1058_RS06785 at 398.393 kb on + strand, within HMPREF1058_RS06785 at 398.424 kb on - strand, within HMPREF1058_RS06785
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 395,265 + HMPREF1058_RS06800 0.74 +0.3 395,302 - HMPREF1058_RS06800 0.76 -0.4 395,302 - HMPREF1058_RS06800 0.76 +0.1 395,316 - HMPREF1058_RS06800 0.77 -0.4 395,452 - HMPREF1058_RS06800 0.84 -1.4 395,455 - HMPREF1058_RS06800 0.85 -2.8 395,455 - HMPREF1058_RS06800 0.85 -0.9 395,477 + HMPREF1058_RS06800 0.86 +1.3 395,478 - HMPREF1058_RS06800 0.86 -0.9 395,484 + HMPREF1058_RS06800 0.86 +1.1 395,535 + HMPREF1058_RS06800 0.89 -1.1 395,566 - +0.6 395,574 - -0.4 395,575 + +0.1 395,575 + -0.7 395,576 - -0.3 395,586 - +0.8 395,590 + +1.1 395,591 - -1.6 395,656 - -0.0 395,668 + -0.6 395,671 + -0.3 395,672 - +1.9 395,672 - -0.9 395,722 + -2.4 395,723 - -0.3 395,741 - -0.6 395,743 + +1.9 395,744 - +0.9 395,746 + +1.6 395,764 - +0.3 395,818 - -0.9 395,838 - +1.3 395,845 + -1.1 395,920 - HMPREF1058_RS06795 0.10 -0.2 395,931 - HMPREF1058_RS06795 0.13 -1.0 396,038 + HMPREF1058_RS06795 0.43 +0.2 396,038 + HMPREF1058_RS06795 0.43 -0.9 396,111 - HMPREF1058_RS06795 0.64 +0.3 396,175 + HMPREF1058_RS06795 0.82 +0.1 396,175 + HMPREF1058_RS06795 0.82 +0.7 396,176 - HMPREF1058_RS06795 0.82 -1.4 396,176 - HMPREF1058_RS06795 0.82 -0.0 396,243 - -1.7 396,346 - -0.8 396,348 - +1.1 396,546 - HMPREF1058_RS06790 0.25 -0.0 396,683 + HMPREF1058_RS06790 0.36 +0.8 396,698 + HMPREF1058_RS06790 0.38 -1.1 396,699 - HMPREF1058_RS06790 0.38 -0.2 396,699 - HMPREF1058_RS06790 0.38 -0.3 396,699 - HMPREF1058_RS06790 0.38 +0.3 396,708 + HMPREF1058_RS06790 0.38 +1.0 396,709 - HMPREF1058_RS06790 0.39 -0.4 396,742 - HMPREF1058_RS06790 0.41 -0.5 396,760 - HMPREF1058_RS06790 0.43 +1.8 396,780 - HMPREF1058_RS06790 0.44 -0.3 396,782 - HMPREF1058_RS06790 0.45 -0.4 396,866 + HMPREF1058_RS06790 0.52 -0.1 396,876 - HMPREF1058_RS06790 0.52 +0.1 396,914 + HMPREF1058_RS06790 0.56 +1.0 396,914 + HMPREF1058_RS06790 0.56 +0.5 396,914 + HMPREF1058_RS06790 0.56 +0.9 396,914 + HMPREF1058_RS06790 0.56 -0.6 396,914 + HMPREF1058_RS06790 0.56 +1.9 396,914 + HMPREF1058_RS06790 0.56 -0.3 396,915 - HMPREF1058_RS06790 0.56 +0.9 396,915 - HMPREF1058_RS06790 0.56 +0.3 396,915 - HMPREF1058_RS06790 0.56 +1.2 397,002 + HMPREF1058_RS06790 0.63 +1.1 397,024 + HMPREF1058_RS06790 0.65 +2.1 397,248 - HMPREF1058_RS06790 0.83 +0.1 397,400 + -1.3 397,401 - +0.3 397,401 - +1.0 397,455 + +2.1 397,465 + +1.0 397,467 + -0.3 397,468 - -0.2 397,528 + -0.6 397,732 + HMPREF1058_RS06785 0.26 -0.2 397,733 - HMPREF1058_RS06785 0.26 +2.3 397,733 - HMPREF1058_RS06785 0.26 +2.0 397,733 - HMPREF1058_RS06785 0.26 -1.1 397,734 + HMPREF1058_RS06785 0.26 +0.3 397,736 + HMPREF1058_RS06785 0.26 +1.1 397,910 - HMPREF1058_RS06785 0.41 +0.3 397,929 + HMPREF1058_RS06785 0.43 -0.3 397,958 + HMPREF1058_RS06785 0.46 +0.7 397,992 + HMPREF1058_RS06785 0.49 -0.3 397,992 + HMPREF1058_RS06785 0.49 -1.4 397,993 - HMPREF1058_RS06785 0.49 -0.3 397,993 - HMPREF1058_RS06785 0.49 -0.3 397,993 - HMPREF1058_RS06785 0.49 -0.0 398,057 - HMPREF1058_RS06785 0.55 -0.1 398,240 + HMPREF1058_RS06785 0.71 -0.1 398,256 - HMPREF1058_RS06785 0.72 -0.9 398,350 - HMPREF1058_RS06785 0.81 +1.4 398,393 + HMPREF1058_RS06785 0.85 +0.3 398,424 - HMPREF1058_RS06785 0.87 -1.3
Or see this region's nucleotide sequence