Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06785 and HMPREF1058_RS06780 are separated by 6 nucleotides HMPREF1058_RS06780 and HMPREF1058_RS06775 overlap by 17 nucleotides HMPREF1058_RS06775 and HMPREF1058_RS06770 overlap by 4 nucleotides
HMPREF1058_RS06785: HMPREF1058_RS06785 - glycosyltransferase family 4 protein, at 397,446 to 398,564
_RS06785
HMPREF1058_RS06780: HMPREF1058_RS06780 - glycosyltransferase family 2 protein, at 398,571 to 399,413
_RS06780
HMPREF1058_RS06775: HMPREF1058_RS06775 - class I SAM-dependent methyltransferase, at 399,397 to 400,179
_RS06775
HMPREF1058_RS06770: HMPREF1058_RS06770 - glycosyltransferase family 4 protein, at 400,176 to 401,324
_RS06770
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 397.732 kb on + strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.733 kb on - strand, within HMPREF1058_RS06785 at 397.734 kb on + strand, within HMPREF1058_RS06785 at 397.736 kb on + strand, within HMPREF1058_RS06785 at 397.910 kb on - strand, within HMPREF1058_RS06785 at 397.929 kb on + strand, within HMPREF1058_RS06785 at 397.958 kb on + strand, within HMPREF1058_RS06785 at 397.992 kb on + strand, within HMPREF1058_RS06785 at 397.992 kb on + strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 397.993 kb on - strand, within HMPREF1058_RS06785 at 398.057 kb on - strand, within HMPREF1058_RS06785 at 398.240 kb on + strand, within HMPREF1058_RS06785 at 398.256 kb on - strand, within HMPREF1058_RS06785 at 398.350 kb on - strand, within HMPREF1058_RS06785 at 398.393 kb on + strand, within HMPREF1058_RS06785 at 398.424 kb on - strand, within HMPREF1058_RS06785 at 398.453 kb on - strand at 398.453 kb on - strand at 398.502 kb on + strand at 398.507 kb on - strand at 398.551 kb on - strand at 398.551 kb on - strand at 398.551 kb on - strand at 398.557 kb on - strand at 398.650 kb on - strand at 398.650 kb on - strand at 398.745 kb on + strand, within HMPREF1058_RS06780 at 398.800 kb on - strand, within HMPREF1058_RS06780 at 398.800 kb on - strand, within HMPREF1058_RS06780 at 398.800 kb on - strand, within HMPREF1058_RS06780 at 398.800 kb on - strand, within HMPREF1058_RS06780 at 398.903 kb on - strand, within HMPREF1058_RS06780 at 398.914 kb on - strand, within HMPREF1058_RS06780 at 398.974 kb on + strand, within HMPREF1058_RS06780 at 399.009 kb on + strand, within HMPREF1058_RS06780 at 399.025 kb on + strand, within HMPREF1058_RS06780 at 399.026 kb on - strand, within HMPREF1058_RS06780 at 399.157 kb on - strand, within HMPREF1058_RS06780 at 399.198 kb on + strand, within HMPREF1058_RS06780 at 399.199 kb on - strand, within HMPREF1058_RS06780 at 399.208 kb on - strand, within HMPREF1058_RS06780 at 399.214 kb on + strand, within HMPREF1058_RS06780 at 399.218 kb on + strand, within HMPREF1058_RS06780 at 399.390 kb on + strand at 399.391 kb on - strand at 399.394 kb on + strand at 399.395 kb on - strand at 399.491 kb on + strand, within HMPREF1058_RS06775 at 399.492 kb on - strand, within HMPREF1058_RS06775 at 399.596 kb on + strand, within HMPREF1058_RS06775 at 399.596 kb on + strand, within HMPREF1058_RS06775 at 399.597 kb on - strand, within HMPREF1058_RS06775 at 399.599 kb on + strand, within HMPREF1058_RS06775 at 399.623 kb on - strand, within HMPREF1058_RS06775 at 399.661 kb on + strand, within HMPREF1058_RS06775 at 399.664 kb on - strand, within HMPREF1058_RS06775 at 399.738 kb on - strand, within HMPREF1058_RS06775 at 399.796 kb on + strand, within HMPREF1058_RS06775 at 399.806 kb on - strand, within HMPREF1058_RS06775 at 399.817 kb on - strand, within HMPREF1058_RS06775 at 399.840 kb on - strand, within HMPREF1058_RS06775 at 399.950 kb on - strand, within HMPREF1058_RS06775 at 400.000 kb on + strand, within HMPREF1058_RS06775 at 400.000 kb on + strand, within HMPREF1058_RS06775 at 400.234 kb on - strand at 400.234 kb on - strand at 400.234 kb on - strand at 400.290 kb on + strand at 400.312 kb on + strand, within HMPREF1058_RS06770 at 400.313 kb on - strand, within HMPREF1058_RS06770 at 400.360 kb on - strand, within HMPREF1058_RS06770
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 397,732 + HMPREF1058_RS06785 0.26 -0.2 397,733 - HMPREF1058_RS06785 0.26 +2.3 397,733 - HMPREF1058_RS06785 0.26 +2.0 397,733 - HMPREF1058_RS06785 0.26 -1.1 397,734 + HMPREF1058_RS06785 0.26 +0.3 397,736 + HMPREF1058_RS06785 0.26 +1.1 397,910 - HMPREF1058_RS06785 0.41 +0.3 397,929 + HMPREF1058_RS06785 0.43 -0.3 397,958 + HMPREF1058_RS06785 0.46 +0.7 397,992 + HMPREF1058_RS06785 0.49 -0.3 397,992 + HMPREF1058_RS06785 0.49 -1.4 397,993 - HMPREF1058_RS06785 0.49 -0.3 397,993 - HMPREF1058_RS06785 0.49 -0.3 397,993 - HMPREF1058_RS06785 0.49 -0.0 398,057 - HMPREF1058_RS06785 0.55 -0.1 398,240 + HMPREF1058_RS06785 0.71 -0.1 398,256 - HMPREF1058_RS06785 0.72 -0.9 398,350 - HMPREF1058_RS06785 0.81 +1.4 398,393 + HMPREF1058_RS06785 0.85 +0.3 398,424 - HMPREF1058_RS06785 0.87 -1.3 398,453 - -0.1 398,453 - -0.5 398,502 + +1.1 398,507 - -0.3 398,551 - +2.1 398,551 - +2.3 398,551 - +1.6 398,557 - +0.2 398,650 - +1.0 398,650 - +1.5 398,745 + HMPREF1058_RS06780 0.21 +0.5 398,800 - HMPREF1058_RS06780 0.27 +2.9 398,800 - HMPREF1058_RS06780 0.27 -0.9 398,800 - HMPREF1058_RS06780 0.27 +1.1 398,800 - HMPREF1058_RS06780 0.27 +0.6 398,903 - HMPREF1058_RS06780 0.39 +0.8 398,914 - HMPREF1058_RS06780 0.41 +1.5 398,974 + HMPREF1058_RS06780 0.48 +0.4 399,009 + HMPREF1058_RS06780 0.52 +1.1 399,025 + HMPREF1058_RS06780 0.54 +1.1 399,026 - HMPREF1058_RS06780 0.54 +0.9 399,157 - HMPREF1058_RS06780 0.70 +0.3 399,198 + HMPREF1058_RS06780 0.74 -0.2 399,199 - HMPREF1058_RS06780 0.74 -0.1 399,208 - HMPREF1058_RS06780 0.76 -0.1 399,214 + HMPREF1058_RS06780 0.76 -1.6 399,218 + HMPREF1058_RS06780 0.77 -1.4 399,390 + -0.8 399,391 - +0.0 399,394 + -0.8 399,395 - -1.3 399,491 + HMPREF1058_RS06775 0.12 +0.2 399,492 - HMPREF1058_RS06775 0.12 -1.1 399,596 + HMPREF1058_RS06775 0.25 +1.9 399,596 + HMPREF1058_RS06775 0.25 +0.5 399,597 - HMPREF1058_RS06775 0.26 -0.8 399,599 + HMPREF1058_RS06775 0.26 +0.1 399,623 - HMPREF1058_RS06775 0.29 -1.3 399,661 + HMPREF1058_RS06775 0.34 +0.6 399,664 - HMPREF1058_RS06775 0.34 -0.4 399,738 - HMPREF1058_RS06775 0.44 +0.4 399,796 + HMPREF1058_RS06775 0.51 -0.3 399,806 - HMPREF1058_RS06775 0.52 -0.3 399,817 - HMPREF1058_RS06775 0.54 -0.4 399,840 - HMPREF1058_RS06775 0.57 +0.2 399,950 - HMPREF1058_RS06775 0.71 +0.8 400,000 + HMPREF1058_RS06775 0.77 +0.8 400,000 + HMPREF1058_RS06775 0.77 +0.8 400,234 - +0.4 400,234 - +0.8 400,234 - +0.2 400,290 + +0.6 400,312 + HMPREF1058_RS06770 0.12 +0.3 400,313 - HMPREF1058_RS06770 0.12 -0.9 400,360 - HMPREF1058_RS06770 0.16 -1.9
Or see this region's nucleotide sequence