Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05820

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
70,327	+				+0.8
70,395	+				+0.9
70,523	+		HMPREF1058_RS05825	0.20	+2.2
70,535	-		HMPREF1058_RS05825	0.22	+0.2
70,535	-		HMPREF1058_RS05825	0.22	+0.5
70,570	-		HMPREF1058_RS05825	0.28	+0.7
70,582	+		HMPREF1058_RS05825	0.30	-0.2
70,583	-		HMPREF1058_RS05825	0.30	+0.1
70,583	-		HMPREF1058_RS05825	0.30	+0.5
70,614	+		HMPREF1058_RS05825	0.35	+0.6
70,627	+		HMPREF1058_RS05825	0.37	-0.2
70,648	+		HMPREF1058_RS05825	0.40	-1.0
70,650	+		HMPREF1058_RS05825	0.40	-0.9
70,651	-		HMPREF1058_RS05825	0.40	+2.1
70,681	+		HMPREF1058_RS05825	0.45	+0.3
70,681	+		HMPREF1058_RS05825	0.45	+1.5
70,714	+		HMPREF1058_RS05825	0.50	-0.2
70,718	-		HMPREF1058_RS05825	0.51	-0.3
70,721	-		HMPREF1058_RS05825	0.51	+2.3
70,721	-		HMPREF1058_RS05825	0.51	-1.1
70,917	+		HMPREF1058_RS05825	0.82	-2.6
71,007	-				+0.1
71,044	-				-1.7
71,185	+		HMPREF1058_RS05820	0.29	+0.4
71,189	+		HMPREF1058_RS05820	0.30	-0.9
71,189	+		HMPREF1058_RS05820	0.30	+0.5
71,259	-		HMPREF1058_RS05820	0.42	-0.5
71,405	-		HMPREF1058_RS05820	0.68	-0.1
71,477	+		HMPREF1058_RS05820	0.80	+2.1
71,480	-		HMPREF1058_RS05820	0.81	+1.6
71,530	+		HMPREF1058_RS05820	0.90	+1.0
71,582	-				+1.0
71,595	+				-1.5
71,633	+				+0.4