Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05790 and HMPREF1058_RS21630 are separated by 172 nucleotides HMPREF1058_RS21630 and HMPREF1058_RS05785 are separated by 344 nucleotides
HMPREF1058_RS05790: HMPREF1058_RS05790 - hypothetical protein, at 79,522 to 79,743
_RS05790
HMPREF1058_RS21630: HMPREF1058_RS21630 - hypothetical protein, at 79,916 to 80,092
_RS21630
HMPREF1058_RS05785: HMPREF1058_RS05785 - adenine nucleotide alpha hydrolase family protein, at 80,437 to 81,192
_RS05785
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 78.691 kb on + strand at 78.696 kb on + strand at 78.728 kb on + strand at 78.728 kb on + strand at 78.730 kb on + strand at 78.730 kb on + strand at 78.731 kb on - strand at 78.731 kb on - strand at 78.734 kb on + strand at 78.760 kb on + strand at 78.761 kb on - strand at 78.761 kb on - strand at 78.766 kb on + strand at 78.766 kb on + strand at 79.087 kb on - strand at 79.118 kb on - strand at 79.134 kb on + strand at 79.135 kb on - strand at 79.458 kb on + strand at 79.487 kb on - strand at 79.517 kb on - strand at 79.596 kb on + strand, within HMPREF1058_RS05790 at 79.597 kb on - strand, within HMPREF1058_RS05790 at 79.656 kb on + strand, within HMPREF1058_RS05790 at 79.742 kb on - strand at 79.744 kb on + strand at 79.745 kb on - strand at 79.748 kb on + strand at 79.821 kb on - strand at 79.823 kb on - strand at 79.836 kb on + strand at 79.842 kb on + strand at 79.843 kb on - strand at 79.964 kb on - strand, within HMPREF1058_RS21630 at 80.021 kb on + strand, within HMPREF1058_RS21630 at 80.021 kb on + strand, within HMPREF1058_RS21630 at 80.022 kb on - strand, within HMPREF1058_RS21630 at 80.023 kb on + strand, within HMPREF1058_RS21630 at 80.023 kb on + strand at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.024 kb on - strand, within HMPREF1058_RS21630 at 80.051 kb on + strand, within HMPREF1058_RS21630 at 80.070 kb on - strand, within HMPREF1058_RS21630 at 80.098 kb on - strand at 80.177 kb on - strand at 80.197 kb on - strand at 80.267 kb on + strand at 80.268 kb on - strand at 80.268 kb on - strand at 80.315 kb on + strand at 80.315 kb on + strand at 80.333 kb on - strand at 80.337 kb on - strand at 80.348 kb on - strand at 80.387 kb on - strand at 80.391 kb on - strand at 80.392 kb on + strand at 80.407 kb on + strand at 80.441 kb on - strand at 80.506 kb on - strand at 80.506 kb on - strand at 80.540 kb on + strand, within HMPREF1058_RS05785 at 80.542 kb on + strand, within HMPREF1058_RS05785 at 80.557 kb on - strand, within HMPREF1058_RS05785 at 80.671 kb on - strand, within HMPREF1058_RS05785 at 80.715 kb on + strand, within HMPREF1058_RS05785 at 80.739 kb on + strand, within HMPREF1058_RS05785
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 78,691 + -1.6 78,696 + +1.0 78,728 + -0.1 78,728 + +1.3 78,730 + +1.7 78,730 + -0.2 78,731 - -1.7 78,731 - -0.1 78,734 + +0.0 78,760 + +1.1 78,761 - +0.1 78,761 - -0.9 78,766 + +0.0 78,766 + +0.0 79,087 - -1.7 79,118 - +0.5 79,134 + +0.2 79,135 - -1.6 79,458 + +1.2 79,487 - +0.6 79,517 - -0.5 79,596 + HMPREF1058_RS05790 0.33 +1.1 79,597 - HMPREF1058_RS05790 0.34 +3.2 79,656 + HMPREF1058_RS05790 0.60 -1.5 79,742 - -0.2 79,744 + -0.7 79,745 - +0.2 79,748 + -1.3 79,821 - -0.8 79,823 - -2.0 79,836 + +0.3 79,842 + +0.4 79,843 - +0.7 79,964 - HMPREF1058_RS21630 0.27 +0.1 80,021 + HMPREF1058_RS21630 0.59 +0.8 80,021 + HMPREF1058_RS21630 0.59 +3.6 80,022 - HMPREF1058_RS21630 0.60 +0.8 80,023 + HMPREF1058_RS21630 0.60 -0.7 80,023 + +1.5 80,024 - HMPREF1058_RS21630 0.61 +0.8 80,024 - HMPREF1058_RS21630 0.61 -0.1 80,024 - HMPREF1058_RS21630 0.61 -2.1 80,051 + HMPREF1058_RS21630 0.76 +0.3 80,070 - HMPREF1058_RS21630 0.87 +0.0 80,098 - +0.2 80,177 - +2.1 80,197 - +0.3 80,267 + -0.4 80,268 - +1.6 80,268 - +0.5 80,315 + +0.4 80,315 + +0.6 80,333 - +0.5 80,337 - -0.6 80,348 - -1.4 80,387 - -0.6 80,391 - -0.2 80,392 + -0.3 80,407 + -0.2 80,441 - -1.4 80,506 - +0.5 80,506 - +0.5 80,540 + HMPREF1058_RS05785 0.14 +3.3 80,542 + HMPREF1058_RS05785 0.14 +1.7 80,557 - HMPREF1058_RS05785 0.16 -0.2 80,671 - HMPREF1058_RS05785 0.31 +0.6 80,715 + HMPREF1058_RS05785 0.37 +0.3 80,739 + HMPREF1058_RS05785 0.40 +0.1
Or see this region's nucleotide sequence