Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04260 and HMPREF1058_RS04255 are separated by 17 nucleotides HMPREF1058_RS04255 and HMPREF1058_RS04250 are separated by 70 nucleotides
HMPREF1058_RS04260: HMPREF1058_RS04260 - DNA recombination protein RmuC, at 80,051 to 81,286
_RS04260
HMPREF1058_RS04255: HMPREF1058_RS04255 - MgtC/SapB family protein, at 81,304 to 81,972
_RS04255
HMPREF1058_RS04250: HMPREF1058_RS04250 - sensor histidine kinase, at 82,043 to 83,512
_RS04250
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 80.389 kb on - strand, within HMPREF1058_RS04260 at 80.529 kb on + strand, within HMPREF1058_RS04260 at 80.686 kb on + strand, within HMPREF1058_RS04260 at 80.689 kb on + strand, within HMPREF1058_RS04260 at 80.689 kb on + strand, within HMPREF1058_RS04260 at 80.701 kb on - strand, within HMPREF1058_RS04260 at 80.702 kb on + strand, within HMPREF1058_RS04260 at 80.736 kb on + strand, within HMPREF1058_RS04260 at 80.736 kb on + strand, within HMPREF1058_RS04260 at 80.737 kb on - strand, within HMPREF1058_RS04260 at 80.849 kb on + strand, within HMPREF1058_RS04260 at 80.850 kb on - strand, within HMPREF1058_RS04260 at 80.850 kb on - strand, within HMPREF1058_RS04260 at 80.909 kb on + strand, within HMPREF1058_RS04260 at 80.983 kb on + strand, within HMPREF1058_RS04260 at 81.008 kb on - strand, within HMPREF1058_RS04260 at 81.061 kb on - strand, within HMPREF1058_RS04260 at 81.445 kb on - strand, within HMPREF1058_RS04255 at 81.460 kb on + strand, within HMPREF1058_RS04255 at 81.469 kb on - strand, within HMPREF1058_RS04255 at 81.561 kb on + strand, within HMPREF1058_RS04255 at 81.562 kb on - strand, within HMPREF1058_RS04255 at 81.562 kb on - strand, within HMPREF1058_RS04255 at 81.562 kb on - strand, within HMPREF1058_RS04255 at 81.564 kb on + strand, within HMPREF1058_RS04255 at 81.655 kb on + strand, within HMPREF1058_RS04255 at 81.656 kb on - strand, within HMPREF1058_RS04255 at 81.656 kb on - strand, within HMPREF1058_RS04255 at 81.656 kb on - strand, within HMPREF1058_RS04255 at 81.708 kb on + strand, within HMPREF1058_RS04255 at 81.709 kb on - strand, within HMPREF1058_RS04255 at 81.728 kb on + strand, within HMPREF1058_RS04255 at 81.732 kb on + strand, within HMPREF1058_RS04255 at 81.819 kb on + strand, within HMPREF1058_RS04255 at 81.885 kb on + strand, within HMPREF1058_RS04255 at 81.960 kb on + strand at 82.100 kb on - strand at 82.106 kb on - strand at 82.207 kb on + strand, within HMPREF1058_RS04250 at 82.356 kb on - strand, within HMPREF1058_RS04250 at 82.381 kb on + strand, within HMPREF1058_RS04250 at 82.381 kb on + strand, within HMPREF1058_RS04250 at 82.462 kb on - strand, within HMPREF1058_RS04250 at 82.475 kb on + strand, within HMPREF1058_RS04250 at 82.476 kb on - strand, within HMPREF1058_RS04250 at 82.487 kb on + strand, within HMPREF1058_RS04250 at 82.487 kb on + strand, within HMPREF1058_RS04250 at 82.520 kb on + strand, within HMPREF1058_RS04250 at 82.553 kb on - strand, within HMPREF1058_RS04250 at 82.555 kb on + strand, within HMPREF1058_RS04250 at 82.583 kb on - strand, within HMPREF1058_RS04250 at 82.657 kb on + strand, within HMPREF1058_RS04250 at 82.765 kb on - strand, within HMPREF1058_RS04250 at 82.765 kb on - strand, within HMPREF1058_RS04250 at 82.824 kb on - strand, within HMPREF1058_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 80,389 - HMPREF1058_RS04260 0.27 +0.8 80,529 + HMPREF1058_RS04260 0.39 -1.0 80,686 + HMPREF1058_RS04260 0.51 -0.6 80,689 + HMPREF1058_RS04260 0.52 +0.4 80,689 + HMPREF1058_RS04260 0.52 +0.1 80,701 - HMPREF1058_RS04260 0.53 -0.4 80,702 + HMPREF1058_RS04260 0.53 +0.1 80,736 + HMPREF1058_RS04260 0.55 +0.4 80,736 + HMPREF1058_RS04260 0.55 -0.5 80,737 - HMPREF1058_RS04260 0.56 +3.1 80,849 + HMPREF1058_RS04260 0.65 +0.5 80,850 - HMPREF1058_RS04260 0.65 -0.5 80,850 - HMPREF1058_RS04260 0.65 -0.2 80,909 + HMPREF1058_RS04260 0.69 +1.7 80,983 + HMPREF1058_RS04260 0.75 +0.4 81,008 - HMPREF1058_RS04260 0.77 -0.3 81,061 - HMPREF1058_RS04260 0.82 -0.1 81,445 - HMPREF1058_RS04255 0.21 -0.2 81,460 + HMPREF1058_RS04255 0.23 -0.5 81,469 - HMPREF1058_RS04255 0.25 -0.5 81,561 + HMPREF1058_RS04255 0.38 -3.1 81,562 - HMPREF1058_RS04255 0.39 +2.5 81,562 - HMPREF1058_RS04255 0.39 +0.5 81,562 - HMPREF1058_RS04255 0.39 +0.3 81,564 + HMPREF1058_RS04255 0.39 +0.9 81,655 + HMPREF1058_RS04255 0.52 -2.0 81,656 - HMPREF1058_RS04255 0.53 -1.5 81,656 - HMPREF1058_RS04255 0.53 +1.9 81,656 - HMPREF1058_RS04255 0.53 +0.3 81,708 + HMPREF1058_RS04255 0.60 -0.3 81,709 - HMPREF1058_RS04255 0.61 +0.5 81,728 + HMPREF1058_RS04255 0.63 +1.9 81,732 + HMPREF1058_RS04255 0.64 -0.4 81,819 + HMPREF1058_RS04255 0.77 +1.2 81,885 + HMPREF1058_RS04255 0.87 +1.7 81,960 + +1.6 82,100 - +0.3 82,106 - +0.3 82,207 + HMPREF1058_RS04250 0.11 +0.3 82,356 - HMPREF1058_RS04250 0.21 -0.1 82,381 + HMPREF1058_RS04250 0.23 -0.1 82,381 + HMPREF1058_RS04250 0.23 -1.6 82,462 - HMPREF1058_RS04250 0.29 -0.4 82,475 + HMPREF1058_RS04250 0.29 +0.5 82,476 - HMPREF1058_RS04250 0.29 +0.2 82,487 + HMPREF1058_RS04250 0.30 -0.3 82,487 + HMPREF1058_RS04250 0.30 +0.0 82,520 + HMPREF1058_RS04250 0.32 +0.4 82,553 - HMPREF1058_RS04250 0.35 -0.2 82,555 + HMPREF1058_RS04250 0.35 +1.6 82,583 - HMPREF1058_RS04250 0.37 +0.3 82,657 + HMPREF1058_RS04250 0.42 +0.1 82,765 - HMPREF1058_RS04250 0.49 +0.6 82,765 - HMPREF1058_RS04250 0.49 -0.1 82,824 - HMPREF1058_RS04250 0.53 +0.1
Or see this region's nucleotide sequence