Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04215

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
88,599	+				+0.5
88,600	-				-2.5
88,603	+				+1.1
88,604	-				+0.2
88,607	-				-0.4
88,607	-				-1.2
88,608	+				-0.2
88,609	-				-0.5
88,762	+		HMPREF1058_RS04220	0.28	-2.6
88,763	-		HMPREF1058_RS04220	0.29	-0.6
88,765	-		HMPREF1058_RS04220	0.29	+0.5
88,805	-		HMPREF1058_RS04220	0.34	-1.4
88,805	-		HMPREF1058_RS04220	0.34	-0.2
88,818	+		HMPREF1058_RS04220	0.35	-0.5
88,893	+		HMPREF1058_RS04220	0.45	+1.1
89,180	-		HMPREF1058_RS04220	0.81	+0.2
89,204	+				-0.1
89,221	+		HMPREF1058_RS04220	0.87	-0.3
89,229	-		HMPREF1058_RS04220	0.88	+0.2
89,308	+				-0.6
89,336	-				+1.5
89,337	+				-0.1
89,360	-				+0.5
89,365	+				-1.0
89,366	-				+0.4
89,398	+				+0.9
89,423	+				-1.3
89,451	+				-0.4
89,451	+				+1.1
89,491	+				-1.0
89,507	-				+0.2
89,569	-				+0.3
89,708	-		HMPREF1058_RS04215	0.24	+2.0
89,780	-		HMPREF1058_RS04215	0.40	+0.3
89,780	-		HMPREF1058_RS04215	0.40	+0.5
89,815	-		HMPREF1058_RS04215	0.48	+0.4
89,862	-		HMPREF1058_RS04215	0.58	+0.4
89,935	-		HMPREF1058_RS04215	0.74	+0.6
89,968	-		HMPREF1058_RS04215	0.81	+0.5
89,998	-		HMPREF1058_RS04215	0.88	+0.8
90,056	+				-0.9
90,057	-				-0.6
90,057	-				+1.2
90,065	+				-0.2
90,065	+				-0.2
90,084	+				+1.1
90,084	+				+0.1
90,085	-				-0.4
90,161	+				-0.4
90,177	-				+1.3
90,202	-				+0.7
90,202	-				+1.1
90,207	+		HMPREF1058_RS04210	0.10	-0.0
90,211	-		HMPREF1058_RS04210	0.11	+0.4
90,266	-		HMPREF1058_RS04210	0.16	+0.5
90,266	-		HMPREF1058_RS04210	0.16	-0.6
90,302	+				+0.8
90,303	-		HMPREF1058_RS04210	0.20	-1.9
90,303	-		HMPREF1058_RS04210	0.20	+0.2
90,369	+		HMPREF1058_RS04210	0.27	+1.4
90,375	-		HMPREF1058_RS04210	0.28	-1.0
90,554	-		HMPREF1058_RS04210	0.46	+0.6
90,570	+		HMPREF1058_RS04210	0.48	+0.2
90,571	-		HMPREF1058_RS04210	0.48	+0.2
90,579	+		HMPREF1058_RS04210	0.49	-0.6
90,580	-		HMPREF1058_RS04210	0.49	-0.2
90,580	-		HMPREF1058_RS04210	0.49	+0.2
90,583	+		HMPREF1058_RS04210	0.49	-1.5
90,597	-		HMPREF1058_RS04210	0.51	-0.0
90,606	+		HMPREF1058_RS04210	0.52	-1.2
90,629	+		HMPREF1058_RS04210	0.54	-1.7
90,630	-		HMPREF1058_RS04210	0.54	-1.2
90,630	-		HMPREF1058_RS04210	0.54	+0.3
90,697	+		HMPREF1058_RS04210	0.61	+1.1
90,698	-		HMPREF1058_RS04210	0.61	+1.6
90,698	-		HMPREF1058_RS04210	0.61	-0.8
90,769	+		HMPREF1058_RS04210	0.69	-0.5
90,777	+		HMPREF1058_RS04210	0.70	-1.4
90,899	+		HMPREF1058_RS04210	0.82	-0.6
90,899	+		HMPREF1058_RS04210	0.82	-1.0
90,905	+		HMPREF1058_RS04210	0.83	+0.7
90,905	+		HMPREF1058_RS04210	0.83	+1.5
90,986	+				+0.5
90,986	+				-0.2
90,986	+				-2.1
90,986	+				-0.9
90,990	+				+2.9
90,991	-				+0.9
90,991	-				+0.1
90,993	-				-1.6
90,993	-				-3.1
90,996	-				-0.2
90,999	-				-1.2
91,035	+				-1.9