Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03940 and HMPREF1058_RS03935 are separated by 61 nucleotides HMPREF1058_RS03935 and HMPREF1058_RS03930 are separated by 58 nucleotides HMPREF1058_RS03930 and HMPREF1058_RS03925 are separated by 8 nucleotides HMPREF1058_RS03925 and HMPREF1058_RS03920 are separated by 82 nucleotides
HMPREF1058_RS03940: HMPREF1058_RS03940 - Nif3-like dinuclear metal center hexameric protein, at 154,119 to 155,213
_RS03940
HMPREF1058_RS03935: HMPREF1058_RS03935 - hypothetical protein, at 155,275 to 155,553
_RS03935
HMPREF1058_RS03930: HMPREF1058_RS03930 - ABC transporter permease, at 155,612 to 156,409
_RS03930
HMPREF1058_RS03925: HMPREF1058_RS03925 - ATP-binding cassette domain-containing protein, at 156,418 to 157,038
_RS03925
HMPREF1058_RS03920: HMPREF1058_RS03920 - proline--tRNA ligase, at 157,121 to 158,611
_RS03920
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 154.618 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.734 kb on - strand, within HMPREF1058_RS03940 at 154.738 kb on - strand, within HMPREF1058_RS03940 at 154.774 kb on - strand, within HMPREF1058_RS03940 at 154.843 kb on - strand, within HMPREF1058_RS03940 at 154.849 kb on - strand, within HMPREF1058_RS03940 at 154.998 kb on - strand, within HMPREF1058_RS03940 at 155.011 kb on - strand, within HMPREF1058_RS03940 at 155.042 kb on - strand, within HMPREF1058_RS03940 at 155.277 kb on - strand at 155.285 kb on + strand at 155.307 kb on + strand, within HMPREF1058_RS03935 at 155.419 kb on + strand, within HMPREF1058_RS03935 at 155.428 kb on + strand, within HMPREF1058_RS03935 at 155.443 kb on - strand, within HMPREF1058_RS03935 at 155.452 kb on - strand, within HMPREF1058_RS03935 at 155.454 kb on + strand, within HMPREF1058_RS03935 at 155.455 kb on - strand, within HMPREF1058_RS03935 at 155.480 kb on + strand, within HMPREF1058_RS03935 at 155.485 kb on + strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.488 kb on - strand, within HMPREF1058_RS03935 at 155.529 kb on + strand at 155.531 kb on + strand at 155.532 kb on - strand at 155.561 kb on + strand at 155.578 kb on + strand at 155.583 kb on - strand at 155.613 kb on + strand at 155.729 kb on - strand, within HMPREF1058_RS03930 at 155.798 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.973 kb on - strand, within HMPREF1058_RS03930 at 155.998 kb on + strand, within HMPREF1058_RS03930 at 156.013 kb on + strand, within HMPREF1058_RS03930 at 156.252 kb on + strand, within HMPREF1058_RS03930 at 156.277 kb on + strand, within HMPREF1058_RS03930 at 156.278 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.352 kb on + strand at 156.393 kb on - strand at 156.427 kb on - strand at 156.837 kb on + strand, within HMPREF1058_RS03925 at 156.865 kb on + strand, within HMPREF1058_RS03925 at 156.887 kb on - strand, within HMPREF1058_RS03925 at 156.945 kb on + strand, within HMPREF1058_RS03925 at 156.946 kb on - strand, within HMPREF1058_RS03925 at 157.018 kb on + strand at 157.020 kb on + strand at 157.043 kb on + strand at 157.089 kb on - strand at 157.089 kb on - strand at 157.089 kb on - strand at 157.106 kb on + strand at 157.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 154,618 - HMPREF1058_RS03940 0.46 -0.6 154,730 - HMPREF1058_RS03940 0.56 +0.3 154,730 - HMPREF1058_RS03940 0.56 -1.7 154,730 - HMPREF1058_RS03940 0.56 +0.2 154,734 - HMPREF1058_RS03940 0.56 -0.5 154,738 - HMPREF1058_RS03940 0.57 -0.4 154,774 - HMPREF1058_RS03940 0.60 +2.8 154,843 - HMPREF1058_RS03940 0.66 -0.8 154,849 - HMPREF1058_RS03940 0.67 +0.3 154,998 - HMPREF1058_RS03940 0.80 +2.7 155,011 - HMPREF1058_RS03940 0.81 +1.0 155,042 - HMPREF1058_RS03940 0.84 +0.9 155,277 - +0.4 155,285 + -0.4 155,307 + HMPREF1058_RS03935 0.11 +0.6 155,419 + HMPREF1058_RS03935 0.52 +0.5 155,428 + HMPREF1058_RS03935 0.55 +0.3 155,443 - HMPREF1058_RS03935 0.60 +0.8 155,452 - HMPREF1058_RS03935 0.63 -0.9 155,454 + HMPREF1058_RS03935 0.64 +0.4 155,455 - HMPREF1058_RS03935 0.65 -1.2 155,480 + HMPREF1058_RS03935 0.73 +0.9 155,485 + HMPREF1058_RS03935 0.75 -1.2 155,486 - HMPREF1058_RS03935 0.76 +0.5 155,486 - HMPREF1058_RS03935 0.76 +0.1 155,488 - HMPREF1058_RS03935 0.76 +0.9 155,529 + +0.2 155,531 + +1.8 155,532 - +0.1 155,561 + +1.4 155,578 + +0.1 155,583 - +0.7 155,613 + -1.0 155,729 - HMPREF1058_RS03930 0.15 +0.8 155,798 - HMPREF1058_RS03930 0.23 -1.5 155,965 - HMPREF1058_RS03930 0.44 +1.1 155,965 - HMPREF1058_RS03930 0.44 +0.2 155,973 - HMPREF1058_RS03930 0.45 -0.8 155,998 + HMPREF1058_RS03930 0.48 +0.5 156,013 + HMPREF1058_RS03930 0.50 +1.3 156,252 + HMPREF1058_RS03930 0.80 +1.6 156,277 + HMPREF1058_RS03930 0.83 +2.4 156,278 - HMPREF1058_RS03930 0.83 +0.6 156,284 - HMPREF1058_RS03930 0.84 +0.4 156,284 - HMPREF1058_RS03930 0.84 -1.3 156,352 + -1.0 156,393 - -0.5 156,427 - -0.1 156,837 + HMPREF1058_RS03925 0.67 +0.8 156,865 + HMPREF1058_RS03925 0.72 +0.0 156,887 - HMPREF1058_RS03925 0.76 +0.1 156,945 + HMPREF1058_RS03925 0.85 +0.2 156,946 - HMPREF1058_RS03925 0.85 +0.2 157,018 + +0.2 157,020 + +0.4 157,043 + +0.5 157,089 - +1.0 157,089 - -1.0 157,089 - -1.0 157,106 + -1.9 157,122 + -1.2
Or see this region's nucleotide sequence