Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03900 and HMPREF1058_RS03895 are separated by 75 nucleotides HMPREF1058_RS03895 and HMPREF1058_RS03890 are separated by 7 nucleotides HMPREF1058_RS03890 and HMPREF1058_RS03885 are separated by 70 nucleotides
HMPREF1058_RS03900: HMPREF1058_RS03900 - DUF2461 domain-containing protein, at 162,414 to 163,079
_RS03900
HMPREF1058_RS03895: HMPREF1058_RS03895 - inositol monophosphatase, at 163,155 to 163,943
_RS03895
HMPREF1058_RS03890: HMPREF1058_RS03890 - phosphatidylinositol-4-phosphate 5-kinase, at 163,951 to 165,069
_RS03890
HMPREF1058_RS03885: HMPREF1058_RS03885 - insulinase family protein, at 165,140 to 166,426
_RS03885
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 163.082 kb on + strand at 163.124 kb on - strand at 163.152 kb on + strand at 163.229 kb on - strand at 163.327 kb on - strand at 163.413 kb on + strand, within HMPREF1058_RS03895 at 163.414 kb on - strand, within HMPREF1058_RS03895 at 163.445 kb on + strand, within HMPREF1058_RS03895 at 163.512 kb on + strand, within HMPREF1058_RS03895 at 163.513 kb on - strand, within HMPREF1058_RS03895 at 163.518 kb on + strand, within HMPREF1058_RS03895 at 163.518 kb on + strand, within HMPREF1058_RS03895 at 163.519 kb on - strand, within HMPREF1058_RS03895 at 163.555 kb on + strand, within HMPREF1058_RS03895 at 163.555 kb on + strand, within HMPREF1058_RS03895 at 163.588 kb on + strand, within HMPREF1058_RS03895 at 163.631 kb on + strand, within HMPREF1058_RS03895 at 163.806 kb on + strand, within HMPREF1058_RS03895 at 163.807 kb on - strand, within HMPREF1058_RS03895 at 163.819 kb on + strand, within HMPREF1058_RS03895 at 163.819 kb on + strand, within HMPREF1058_RS03895 at 163.874 kb on + strand at 163.902 kb on + strand at 163.903 kb on - strand at 163.911 kb on + strand at 163.912 kb on - strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.945 kb on - strand at 163.953 kb on - strand at 163.986 kb on - strand at 164.075 kb on - strand, within HMPREF1058_RS03890 at 164.085 kb on + strand, within HMPREF1058_RS03890 at 164.139 kb on - strand, within HMPREF1058_RS03890 at 164.208 kb on - strand, within HMPREF1058_RS03890 at 164.208 kb on - strand, within HMPREF1058_RS03890 at 164.229 kb on + strand, within HMPREF1058_RS03890 at 164.230 kb on - strand, within HMPREF1058_RS03890 at 164.232 kb on - strand, within HMPREF1058_RS03890 at 164.232 kb on - strand, within HMPREF1058_RS03890 at 164.232 kb on - strand, within HMPREF1058_RS03890 at 164.277 kb on - strand, within HMPREF1058_RS03890 at 164.277 kb on - strand at 164.298 kb on + strand, within HMPREF1058_RS03890 at 164.345 kb on + strand, within HMPREF1058_RS03890 at 164.346 kb on - strand, within HMPREF1058_RS03890 at 164.346 kb on - strand, within HMPREF1058_RS03890 at 164.346 kb on - strand, within HMPREF1058_RS03890 at 164.361 kb on + strand, within HMPREF1058_RS03890 at 164.366 kb on - strand, within HMPREF1058_RS03890 at 164.369 kb on + strand, within HMPREF1058_RS03890 at 164.369 kb on + strand, within HMPREF1058_RS03890 at 164.370 kb on - strand, within HMPREF1058_RS03890 at 164.402 kb on + strand, within HMPREF1058_RS03890 at 164.402 kb on + strand, within HMPREF1058_RS03890 at 164.403 kb on - strand, within HMPREF1058_RS03890 at 164.438 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.483 kb on + strand, within HMPREF1058_RS03890 at 164.484 kb on - strand, within HMPREF1058_RS03890 at 164.645 kb on + strand, within HMPREF1058_RS03890 at 164.646 kb on - strand, within HMPREF1058_RS03890 at 164.687 kb on - strand, within HMPREF1058_RS03890 at 164.689 kb on - strand, within HMPREF1058_RS03890 at 164.690 kb on + strand, within HMPREF1058_RS03890 at 164.691 kb on - strand, within HMPREF1058_RS03890 at 164.691 kb on - strand, within HMPREF1058_RS03890 at 164.691 kb on - strand, within HMPREF1058_RS03890 at 164.705 kb on + strand, within HMPREF1058_RS03890 at 164.706 kb on - strand, within HMPREF1058_RS03890 at 164.711 kb on + strand, within HMPREF1058_RS03890 at 164.712 kb on - strand, within HMPREF1058_RS03890 at 164.712 kb on - strand, within HMPREF1058_RS03890 at 164.712 kb on - strand at 164.752 kb on - strand, within HMPREF1058_RS03890 at 164.783 kb on + strand, within HMPREF1058_RS03890 at 164.829 kb on - strand, within HMPREF1058_RS03890 at 164.853 kb on - strand, within HMPREF1058_RS03890 at 164.881 kb on + strand, within HMPREF1058_RS03890 at 164.902 kb on - strand, within HMPREF1058_RS03890 at 164.915 kb on + strand, within HMPREF1058_RS03890 at 164.966 kb on + strand at 164.967 kb on - strand at 164.989 kb on - strand at 165.024 kb on + strand at 165.024 kb on + strand at 165.024 kb on + strand at 165.047 kb on - strand at 165.048 kb on + strand at 165.049 kb on + strand at 165.049 kb on + strand at 165.050 kb on - strand at 165.050 kb on - strand at 165.051 kb on + strand at 165.051 kb on + strand at 165.052 kb on - strand at 165.082 kb on + strand at 165.082 kb on + strand at 165.082 kb on + strand at 165.083 kb on - strand at 165.091 kb on + strand at 165.091 kb on + strand at 165.118 kb on + strand at 165.134 kb on - strand at 165.189 kb on + strand at 165.284 kb on + strand, within HMPREF1058_RS03885 at 165.288 kb on + strand, within HMPREF1058_RS03885 at 165.351 kb on + strand, within HMPREF1058_RS03885 at 165.444 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.519 kb on + strand, within HMPREF1058_RS03885 at 165.523 kb on + strand, within HMPREF1058_RS03885 at 165.523 kb on + strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.524 kb on - strand, within HMPREF1058_RS03885 at 165.525 kb on + strand, within HMPREF1058_RS03885 at 165.525 kb on + strand, within HMPREF1058_RS03885 at 165.526 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.773 kb on - strand, within HMPREF1058_RS03885 at 165.780 kb on - strand, within HMPREF1058_RS03885 at 165.781 kb on + strand, within HMPREF1058_RS03885 at 165.817 kb on + strand, within HMPREF1058_RS03885 at 165.847 kb on - strand, within HMPREF1058_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 163,082 + -4.1 163,124 - +0.4 163,152 + -0.2 163,229 - +0.5 163,327 - -0.7 163,413 + HMPREF1058_RS03895 0.33 -1.8 163,414 - HMPREF1058_RS03895 0.33 -1.5 163,445 + HMPREF1058_RS03895 0.37 +0.7 163,512 + HMPREF1058_RS03895 0.45 -1.0 163,513 - HMPREF1058_RS03895 0.45 -1.0 163,518 + HMPREF1058_RS03895 0.46 -1.9 163,518 + HMPREF1058_RS03895 0.46 +0.4 163,519 - HMPREF1058_RS03895 0.46 +0.4 163,555 + HMPREF1058_RS03895 0.51 +1.3 163,555 + HMPREF1058_RS03895 0.51 -0.3 163,588 + HMPREF1058_RS03895 0.55 -1.4 163,631 + HMPREF1058_RS03895 0.60 +0.9 163,806 + HMPREF1058_RS03895 0.83 -0.7 163,807 - HMPREF1058_RS03895 0.83 +0.0 163,819 + HMPREF1058_RS03895 0.84 -0.9 163,819 + HMPREF1058_RS03895 0.84 -0.2 163,874 + -0.6 163,902 + -0.4 163,903 - +0.5 163,911 + +1.0 163,912 - +1.5 163,944 + +0.5 163,944 + -1.7 163,945 - -1.6 163,953 - +0.1 163,986 - +0.4 164,075 - HMPREF1058_RS03890 0.11 +0.2 164,085 + HMPREF1058_RS03890 0.12 +0.4 164,139 - HMPREF1058_RS03890 0.17 +0.5 164,208 - HMPREF1058_RS03890 0.23 +1.6 164,208 - HMPREF1058_RS03890 0.23 +1.6 164,229 + HMPREF1058_RS03890 0.25 -1.2 164,230 - HMPREF1058_RS03890 0.25 +0.7 164,232 - HMPREF1058_RS03890 0.25 +0.4 164,232 - HMPREF1058_RS03890 0.25 +0.2 164,232 - HMPREF1058_RS03890 0.25 +2.6 164,277 - HMPREF1058_RS03890 0.29 +0.2 164,277 - +0.7 164,298 + HMPREF1058_RS03890 0.31 -1.7 164,345 + HMPREF1058_RS03890 0.35 +0.2 164,346 - HMPREF1058_RS03890 0.35 +1.8 164,346 - HMPREF1058_RS03890 0.35 +3.4 164,346 - HMPREF1058_RS03890 0.35 +0.9 164,361 + HMPREF1058_RS03890 0.37 +1.5 164,366 - HMPREF1058_RS03890 0.37 -1.1 164,369 + HMPREF1058_RS03890 0.37 +1.6 164,369 + HMPREF1058_RS03890 0.37 +0.8 164,370 - HMPREF1058_RS03890 0.37 -0.1 164,402 + HMPREF1058_RS03890 0.40 +0.8 164,402 + HMPREF1058_RS03890 0.40 +0.5 164,403 - HMPREF1058_RS03890 0.40 +0.9 164,438 + HMPREF1058_RS03890 0.44 -0.4 164,483 + HMPREF1058_RS03890 0.48 +0.6 164,483 + HMPREF1058_RS03890 0.48 +1.2 164,483 + HMPREF1058_RS03890 0.48 -0.6 164,483 + HMPREF1058_RS03890 0.48 -0.8 164,483 + HMPREF1058_RS03890 0.48 -1.6 164,483 + HMPREF1058_RS03890 0.48 -0.2 164,484 - HMPREF1058_RS03890 0.48 +2.2 164,645 + HMPREF1058_RS03890 0.62 -0.9 164,646 - HMPREF1058_RS03890 0.62 +1.9 164,687 - HMPREF1058_RS03890 0.66 -1.0 164,689 - HMPREF1058_RS03890 0.66 +1.3 164,690 + HMPREF1058_RS03890 0.66 +1.1 164,691 - HMPREF1058_RS03890 0.66 +1.1 164,691 - HMPREF1058_RS03890 0.66 +0.3 164,691 - HMPREF1058_RS03890 0.66 +0.2 164,705 + HMPREF1058_RS03890 0.67 +1.2 164,706 - HMPREF1058_RS03890 0.67 +1.2 164,711 + HMPREF1058_RS03890 0.68 +0.0 164,712 - HMPREF1058_RS03890 0.68 +1.8 164,712 - HMPREF1058_RS03890 0.68 +0.1 164,712 - +2.5 164,752 - HMPREF1058_RS03890 0.72 +0.2 164,783 + HMPREF1058_RS03890 0.74 +1.2 164,829 - HMPREF1058_RS03890 0.78 +0.2 164,853 - HMPREF1058_RS03890 0.81 +0.3 164,881 + HMPREF1058_RS03890 0.83 +1.2 164,902 - HMPREF1058_RS03890 0.85 +1.0 164,915 + HMPREF1058_RS03890 0.86 -0.6 164,966 + +0.7 164,967 - +0.3 164,989 - +1.3 165,024 + -0.7 165,024 + +2.4 165,024 + +1.2 165,047 - +2.4 165,048 + +2.9 165,049 + +1.5 165,049 + +1.5 165,050 - +2.1 165,050 - -0.8 165,051 + -0.1 165,051 + -0.4 165,052 - -0.7 165,082 + +0.6 165,082 + +0.0 165,082 + +2.2 165,083 - -0.2 165,091 + +0.5 165,091 + +1.3 165,118 + +0.0 165,134 - +0.6 165,189 + -0.9 165,284 + HMPREF1058_RS03885 0.11 -1.4 165,288 + HMPREF1058_RS03885 0.11 +0.3 165,351 + HMPREF1058_RS03885 0.16 -1.5 165,444 + HMPREF1058_RS03885 0.24 +0.1 165,519 + HMPREF1058_RS03885 0.29 -1.0 165,519 + HMPREF1058_RS03885 0.29 -1.3 165,519 + HMPREF1058_RS03885 0.29 +0.9 165,523 + HMPREF1058_RS03885 0.30 +0.2 165,523 + HMPREF1058_RS03885 0.30 +1.5 165,524 - HMPREF1058_RS03885 0.30 -0.1 165,524 - HMPREF1058_RS03885 0.30 -0.0 165,524 - HMPREF1058_RS03885 0.30 -1.4 165,524 - HMPREF1058_RS03885 0.30 -0.1 165,524 - HMPREF1058_RS03885 0.30 +0.4 165,524 - HMPREF1058_RS03885 0.30 -1.5 165,524 - HMPREF1058_RS03885 0.30 -0.5 165,525 + HMPREF1058_RS03885 0.30 +2.4 165,525 + HMPREF1058_RS03885 0.30 -0.1 165,526 - HMPREF1058_RS03885 0.30 -0.7 165,773 - HMPREF1058_RS03885 0.49 -0.4 165,773 - HMPREF1058_RS03885 0.49 -0.9 165,773 - HMPREF1058_RS03885 0.49 +0.1 165,780 - HMPREF1058_RS03885 0.50 -0.9 165,781 + HMPREF1058_RS03885 0.50 -0.4 165,817 + HMPREF1058_RS03885 0.53 +0.1 165,847 - HMPREF1058_RS03885 0.55 -1.0
Or see this region's nucleotide sequence