Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides HMPREF1058_RS03765 and HMPREF1058_RS03760 are separated by 83 nucleotides HMPREF1058_RS03760 and HMPREF1058_RS03755 are separated by 99 nucleotides
HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892
_RS03770
HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665
_RS03765
HMPREF1058_RS03760: HMPREF1058_RS03760 - UDP-N-acetyl glucosamine 2-epimerase, at 191,749 to 192,837
_RS03760
HMPREF1058_RS03755: HMPREF1058_RS03755 - DUF3078 domain-containing protein, at 192,937 to 194,331
_RS03755
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 190.843 kb on - strand at 190.880 kb on + strand at 190.892 kb on + strand at 191.079 kb on - strand at 191.087 kb on - strand at 191.125 kb on + strand, within HMPREF1058_RS03765 at 191.126 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.136 kb on - strand, within HMPREF1058_RS03765 at 191.177 kb on + strand, within HMPREF1058_RS03765 at 191.254 kb on + strand, within HMPREF1058_RS03765 at 191.255 kb on - strand, within HMPREF1058_RS03765 at 191.306 kb on + strand at 191.307 kb on - strand, within HMPREF1058_RS03765 at 191.309 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.438 kb on + strand, within HMPREF1058_RS03765 at 191.465 kb on + strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.469 kb on - strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.473 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.476 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.559 kb on - strand, within HMPREF1058_RS03765 at 191.562 kb on + strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand at 191.633 kb on + strand at 191.643 kb on - strand at 191.665 kb on + strand at 191.665 kb on + strand at 191.735 kb on + strand at 191.756 kb on + strand at 191.937 kb on - strand, within HMPREF1058_RS03760 at 191.937 kb on - strand, within HMPREF1058_RS03760 at 191.938 kb on + strand, within HMPREF1058_RS03760 at 191.939 kb on - strand, within HMPREF1058_RS03760 at 191.948 kb on + strand, within HMPREF1058_RS03760 at 191.953 kb on - strand, within HMPREF1058_RS03760 at 191.982 kb on + strand, within HMPREF1058_RS03760 at 191.983 kb on - strand, within HMPREF1058_RS03760 at 191.983 kb on - strand, within HMPREF1058_RS03760 at 191.984 kb on + strand, within HMPREF1058_RS03760 at 191.984 kb on + strand, within HMPREF1058_RS03760 at 192.032 kb on + strand, within HMPREF1058_RS03760 at 192.033 kb on - strand, within HMPREF1058_RS03760 at 192.033 kb on - strand, within HMPREF1058_RS03760 at 192.077 kb on + strand, within HMPREF1058_RS03760 at 192.142 kb on - strand, within HMPREF1058_RS03760 at 192.255 kb on - strand, within HMPREF1058_RS03760 at 192.366 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.468 kb on + strand, within HMPREF1058_RS03760 at 192.472 kb on + strand, within HMPREF1058_RS03760 at 192.473 kb on - strand, within HMPREF1058_RS03760 at 192.520 kb on + strand, within HMPREF1058_RS03760 at 192.522 kb on + strand, within HMPREF1058_RS03760 at 192.523 kb on - strand, within HMPREF1058_RS03760 at 192.523 kb on - strand, within HMPREF1058_RS03760 at 192.524 kb on + strand, within HMPREF1058_RS03760 at 192.809 kb on + strand at 192.836 kb on - strand at 192.873 kb on + strand at 192.963 kb on + strand at 192.996 kb on + strand at 192.997 kb on - strand at 193.047 kb on + strand at 193.047 kb on + strand at 193.051 kb on - strand at 193.059 kb on - strand at 193.078 kb on - strand, within HMPREF1058_RS03755 at 193.113 kb on - strand, within HMPREF1058_RS03755 at 193.120 kb on - strand, within HMPREF1058_RS03755 at 193.124 kb on + strand, within HMPREF1058_RS03755 at 193.182 kb on + strand, within HMPREF1058_RS03755 at 193.231 kb on - strand, within HMPREF1058_RS03755 at 193.254 kb on + strand, within HMPREF1058_RS03755 at 193.268 kb on + strand, within HMPREF1058_RS03755 at 193.268 kb on + strand, within HMPREF1058_RS03755 at 193.269 kb on - strand, within HMPREF1058_RS03755 at 193.269 kb on - strand, within HMPREF1058_RS03755 at 193.281 kb on - strand, within HMPREF1058_RS03755 at 193.332 kb on + strand, within HMPREF1058_RS03755 at 193.407 kb on + strand, within HMPREF1058_RS03755 at 193.409 kb on + strand, within HMPREF1058_RS03755 at 193.449 kb on + strand, within HMPREF1058_RS03755 at 193.474 kb on + strand, within HMPREF1058_RS03755 at 193.474 kb on + strand, within HMPREF1058_RS03755 at 193.475 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.525 kb on - strand, within HMPREF1058_RS03755 at 193.533 kb on + strand, within HMPREF1058_RS03755 at 193.663 kb on - strand, within HMPREF1058_RS03755 at 193.665 kb on - strand, within HMPREF1058_RS03755 at 193.682 kb on + strand, within HMPREF1058_RS03755 at 193.739 kb on - strand, within HMPREF1058_RS03755 at 193.831 kb on + strand, within HMPREF1058_RS03755
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 190,843 - +3.4 190,880 + +4.1 190,892 + +4.9 191,079 - +0.9 191,087 - +1.7 191,125 + HMPREF1058_RS03765 0.12 +0.5 191,126 - HMPREF1058_RS03765 0.12 +1.1 191,129 - HMPREF1058_RS03765 0.13 +1.1 191,129 - HMPREF1058_RS03765 0.13 +2.4 191,129 - HMPREF1058_RS03765 0.13 +0.9 191,136 - HMPREF1058_RS03765 0.14 +1.2 191,177 + HMPREF1058_RS03765 0.20 -0.2 191,254 + HMPREF1058_RS03765 0.33 -0.1 191,255 - HMPREF1058_RS03765 0.33 +1.9 191,306 + +2.3 191,307 - HMPREF1058_RS03765 0.42 +1.9 191,309 - HMPREF1058_RS03765 0.42 +1.5 191,411 - HMPREF1058_RS03765 0.59 +1.1 191,411 - HMPREF1058_RS03765 0.59 +0.6 191,422 - HMPREF1058_RS03765 0.60 +1.0 191,422 - HMPREF1058_RS03765 0.60 -0.3 191,438 + HMPREF1058_RS03765 0.63 +1.4 191,465 + HMPREF1058_RS03765 0.67 +1.4 191,466 - HMPREF1058_RS03765 0.67 +2.7 191,466 - HMPREF1058_RS03765 0.67 +0.1 191,469 - HMPREF1058_RS03765 0.68 +0.2 191,472 + HMPREF1058_RS03765 0.68 +1.9 191,472 + HMPREF1058_RS03765 0.68 +1.9 191,473 - HMPREF1058_RS03765 0.69 +1.2 191,475 - HMPREF1058_RS03765 0.69 +3.1 191,475 - HMPREF1058_RS03765 0.69 +2.3 191,476 + HMPREF1058_RS03765 0.69 +0.5 191,527 + HMPREF1058_RS03765 0.77 -0.2 191,527 + HMPREF1058_RS03765 0.77 +1.1 191,559 - HMPREF1058_RS03765 0.83 -0.5 191,562 + HMPREF1058_RS03765 0.83 -0.4 191,563 - HMPREF1058_RS03765 0.83 +1.2 191,563 - HMPREF1058_RS03765 0.83 +1.5 191,563 - HMPREF1058_RS03765 0.83 -0.1 191,563 - +0.8 191,633 + +0.5 191,643 - +1.3 191,665 + +0.3 191,665 + +1.5 191,735 + -1.7 191,756 + -0.4 191,937 - HMPREF1058_RS03760 0.17 +0.6 191,937 - HMPREF1058_RS03760 0.17 +1.1 191,938 + HMPREF1058_RS03760 0.17 -0.4 191,939 - HMPREF1058_RS03760 0.17 +0.2 191,948 + HMPREF1058_RS03760 0.18 +1.1 191,953 - HMPREF1058_RS03760 0.19 -2.2 191,982 + HMPREF1058_RS03760 0.21 +0.5 191,983 - HMPREF1058_RS03760 0.21 +0.1 191,983 - HMPREF1058_RS03760 0.21 +2.6 191,984 + HMPREF1058_RS03760 0.22 +1.8 191,984 + HMPREF1058_RS03760 0.22 +2.0 192,032 + HMPREF1058_RS03760 0.26 -0.5 192,033 - HMPREF1058_RS03760 0.26 -0.0 192,033 - HMPREF1058_RS03760 0.26 +0.6 192,077 + HMPREF1058_RS03760 0.30 +0.6 192,142 - HMPREF1058_RS03760 0.36 -0.2 192,255 - HMPREF1058_RS03760 0.46 +0.9 192,366 - HMPREF1058_RS03760 0.57 +0.0 192,427 - HMPREF1058_RS03760 0.62 -1.7 192,427 - HMPREF1058_RS03760 0.62 -0.7 192,427 - HMPREF1058_RS03760 0.62 -0.0 192,468 + HMPREF1058_RS03760 0.66 +0.3 192,472 + HMPREF1058_RS03760 0.66 +2.1 192,473 - HMPREF1058_RS03760 0.66 -1.6 192,520 + HMPREF1058_RS03760 0.71 -1.0 192,522 + HMPREF1058_RS03760 0.71 +0.9 192,523 - HMPREF1058_RS03760 0.71 +1.1 192,523 - HMPREF1058_RS03760 0.71 -1.4 192,524 + HMPREF1058_RS03760 0.71 -2.0 192,809 + -1.9 192,836 - -0.5 192,873 + +0.3 192,963 + +1.8 192,996 + -0.1 192,997 - +0.1 193,047 + +0.2 193,047 + -1.2 193,051 - -0.2 193,059 - -0.1 193,078 - HMPREF1058_RS03755 0.10 -0.7 193,113 - HMPREF1058_RS03755 0.13 +2.1 193,120 - HMPREF1058_RS03755 0.13 -0.8 193,124 + HMPREF1058_RS03755 0.13 +0.2 193,182 + HMPREF1058_RS03755 0.18 +0.5 193,231 - HMPREF1058_RS03755 0.21 +0.2 193,254 + HMPREF1058_RS03755 0.23 -0.7 193,268 + HMPREF1058_RS03755 0.24 -0.5 193,268 + HMPREF1058_RS03755 0.24 -0.5 193,269 - HMPREF1058_RS03755 0.24 +1.8 193,269 - HMPREF1058_RS03755 0.24 -0.4 193,281 - HMPREF1058_RS03755 0.25 -0.2 193,332 + HMPREF1058_RS03755 0.28 +2.3 193,407 + HMPREF1058_RS03755 0.34 -0.8 193,409 + HMPREF1058_RS03755 0.34 -1.8 193,449 + HMPREF1058_RS03755 0.37 -1.3 193,474 + HMPREF1058_RS03755 0.38 -0.4 193,474 + HMPREF1058_RS03755 0.38 +0.5 193,475 - HMPREF1058_RS03755 0.39 -3.3 193,521 - HMPREF1058_RS03755 0.42 -2.3 193,521 - HMPREF1058_RS03755 0.42 -0.2 193,521 - HMPREF1058_RS03755 0.42 +0.3 193,525 - HMPREF1058_RS03755 0.42 -0.7 193,533 + HMPREF1058_RS03755 0.43 -0.1 193,663 - HMPREF1058_RS03755 0.52 +2.1 193,665 - HMPREF1058_RS03755 0.52 -0.5 193,682 + HMPREF1058_RS03755 0.53 -0.8 193,739 - HMPREF1058_RS03755 0.57 -0.4 193,831 + HMPREF1058_RS03755 0.64 +0.4
Or see this region's nucleotide sequence