Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03560 and HMPREF1058_RS03555 are separated by 30 nucleotides HMPREF1058_RS03555 and HMPREF1058_RS03550 are separated by 210 nucleotides HMPREF1058_RS03550 and HMPREF1058_RS03545 are separated by 36 nucleotides
HMPREF1058_RS03560: HMPREF1058_RS03560 - hypothetical protein, at 248,197 to 248,424
_RS03560
HMPREF1058_RS03555: HMPREF1058_RS03555 - glutathione peroxidase, at 248,455 to 248,994
_RS03555
HMPREF1058_RS03550: HMPREF1058_RS03550 - AAA family ATPase, at 249,205 to 250,977
_RS03550
HMPREF1058_RS03545: HMPREF1058_RS03545 - sigma-54-dependent Fis family transcriptional regulator, at 251,014 to 252,354
_RS03545
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 248.422 kb on + strand at 248.457 kb on - strand at 248.627 kb on - strand, within HMPREF1058_RS03555 at 248.627 kb on - strand, within HMPREF1058_RS03555 at 248.647 kb on + strand, within HMPREF1058_RS03555 at 248.689 kb on - strand, within HMPREF1058_RS03555 at 248.832 kb on + strand, within HMPREF1058_RS03555 at 248.902 kb on - strand, within HMPREF1058_RS03555 at 248.914 kb on - strand, within HMPREF1058_RS03555 at 248.922 kb on - strand, within HMPREF1058_RS03555 at 248.978 kb on - strand at 248.982 kb on + strand at 249.004 kb on + strand at 249.014 kb on + strand at 249.169 kb on + strand at 249.179 kb on + strand at 249.286 kb on + strand at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.447 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.468 kb on + strand, within HMPREF1058_RS03550 at 250.552 kb on + strand, within HMPREF1058_RS03550 at 250.666 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.766 kb on + strand, within HMPREF1058_RS03550 at 250.949 kb on + strand at 250.949 kb on + strand at 250.952 kb on + strand at 250.953 kb on - strand at 250.955 kb on - strand at 250.975 kb on + strand at 250.975 kb on + strand at 250.975 kb on + strand at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.602 kb on - strand, within HMPREF1058_RS03545 at 251.665 kb on - strand, within HMPREF1058_RS03545 at 251.783 kb on + strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand at 251.934 kb on + strand, within HMPREF1058_RS03545
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 248,422 + -0.2 248,457 - -1.5 248,627 - HMPREF1058_RS03555 0.32 -0.5 248,627 - HMPREF1058_RS03555 0.32 +1.0 248,647 + HMPREF1058_RS03555 0.36 +0.7 248,689 - HMPREF1058_RS03555 0.43 +0.3 248,832 + HMPREF1058_RS03555 0.70 -0.9 248,902 - HMPREF1058_RS03555 0.83 +0.7 248,914 - HMPREF1058_RS03555 0.85 +2.1 248,922 - HMPREF1058_RS03555 0.86 -0.2 248,978 - +0.5 248,982 + -1.9 249,004 + +0.2 249,014 + -0.1 249,169 + -0.3 249,179 + +1.6 249,286 + -0.2 250,445 + HMPREF1058_RS03550 0.70 +0.2 250,445 + HMPREF1058_RS03550 0.70 -0.6 250,445 + HMPREF1058_RS03550 0.70 +1.0 250,447 + HMPREF1058_RS03550 0.70 -0.1 250,453 + HMPREF1058_RS03550 0.70 +2.4 250,453 + HMPREF1058_RS03550 0.70 +1.3 250,468 + HMPREF1058_RS03550 0.71 +0.3 250,552 + HMPREF1058_RS03550 0.76 -1.3 250,666 + HMPREF1058_RS03550 0.82 +0.2 250,759 + HMPREF1058_RS03550 0.88 -0.5 250,759 + HMPREF1058_RS03550 0.88 +2.4 250,766 + HMPREF1058_RS03550 0.88 -0.4 250,949 + +0.5 250,949 + +1.5 250,952 + +0.8 250,953 - -0.4 250,955 - +0.5 250,975 + +0.3 250,975 + -1.5 250,975 + -1.2 251,442 + HMPREF1058_RS03545 0.32 +1.3 251,442 + HMPREF1058_RS03545 0.32 +0.6 251,602 - HMPREF1058_RS03545 0.44 +0.3 251,665 - HMPREF1058_RS03545 0.49 -0.2 251,783 + HMPREF1058_RS03545 0.57 -0.3 251,850 - HMPREF1058_RS03545 0.62 +1.1 251,850 - HMPREF1058_RS03545 0.62 -1.2 251,850 - -0.1 251,934 + HMPREF1058_RS03545 0.69 +0.4
Or see this region's nucleotide sequence