Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03100 and HMPREF1058_RS03095 are separated by 73 nucleotides HMPREF1058_RS03095 and HMPREF1058_RS03090 are separated by 381 nucleotides HMPREF1058_RS03090 and HMPREF1058_RS03085 are separated by 180 nucleotides HMPREF1058_RS03085 and HMPREF1058_RS03080 are separated by 123 nucleotides
HMPREF1058_RS03100: HMPREF1058_RS03100 - LPS export ABC transporter ATP-binding protein, at 11,500 to 12,321
_RS03100
HMPREF1058_RS03095: HMPREF1058_RS03095 - RNA-binding protein, at 12,395 to 12,640
_RS03095
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
HMPREF1058_RS03085: HMPREF1058_RS03085 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 14,558 to 15,229
_RS03085
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 12.317 kb on + strand at 12.339 kb on + strand at 12.382 kb on - strand at 12.382 kb on - strand at 12.388 kb on + strand at 12.389 kb on - strand at 12.392 kb on + strand at 12.393 kb on - strand at 12.396 kb on + strand at 12.397 kb on - strand at 12.404 kb on - strand at 12.523 kb on + strand, within HMPREF1058_RS03095 at 12.559 kb on + strand, within HMPREF1058_RS03095 at 12.560 kb on - strand, within HMPREF1058_RS03095 at 12.612 kb on + strand, within HMPREF1058_RS03095 at 12.617 kb on - strand at 12.631 kb on - strand at 12.691 kb on + strand at 12.703 kb on - strand at 12.732 kb on - strand at 12.752 kb on + strand at 12.780 kb on - strand at 12.781 kb on + strand at 12.782 kb on - strand at 12.890 kb on - strand at 12.997 kb on - strand at 13.000 kb on - strand at 13.012 kb on - strand at 13.028 kb on - strand at 13.105 kb on - strand at 13.142 kb on - strand at 13.226 kb on - strand, within HMPREF1058_RS03090 at 13.255 kb on + strand, within HMPREF1058_RS03090 at 13.277 kb on - strand, within HMPREF1058_RS03090 at 13.381 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.418 kb on + strand, within HMPREF1058_RS03090 at 13.419 kb on - strand, within HMPREF1058_RS03090 at 13.421 kb on - strand, within HMPREF1058_RS03090 at 13.487 kb on + strand, within HMPREF1058_RS03090 at 13.488 kb on - strand, within HMPREF1058_RS03090 at 13.492 kb on + strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.493 kb on - strand, within HMPREF1058_RS03090 at 13.498 kb on - strand, within HMPREF1058_RS03090 at 13.505 kb on + strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.506 kb on - strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090 at 13.643 kb on - strand, within HMPREF1058_RS03090 at 13.675 kb on + strand, within HMPREF1058_RS03090 at 13.676 kb on - strand, within HMPREF1058_RS03090 at 13.723 kb on - strand, within HMPREF1058_RS03090 at 13.732 kb on - strand, within HMPREF1058_RS03090 at 13.763 kb on - strand, within HMPREF1058_RS03090 at 13.928 kb on - strand at 13.952 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.964 kb on - strand, within HMPREF1058_RS03090 at 14.116 kb on + strand, within HMPREF1058_RS03090 at 14.220 kb on + strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.323 kb on + strand at 14.328 kb on + strand at 14.347 kb on + strand at 14.376 kb on - strand at 14.379 kb on - strand at 14.387 kb on - strand at 14.461 kb on + strand at 14.761 kb on + strand, within HMPREF1058_RS03085 at 14.812 kb on + strand, within HMPREF1058_RS03085 at 14.814 kb on + strand, within HMPREF1058_RS03085 at 14.824 kb on + strand, within HMPREF1058_RS03085 at 15.129 kb on + strand, within HMPREF1058_RS03085 at 15.262 kb on - strand at 15.322 kb on + strand at 15.335 kb on + strand at 15.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 12,317 + +0.6 12,339 + -0.3 12,382 - +0.7 12,382 - +0.5 12,388 + -0.2 12,389 - +0.5 12,392 + -0.1 12,393 - +0.8 12,396 + -0.3 12,397 - -0.1 12,404 - +1.4 12,523 + HMPREF1058_RS03095 0.52 -1.3 12,559 + HMPREF1058_RS03095 0.67 -0.6 12,560 - HMPREF1058_RS03095 0.67 +0.2 12,612 + HMPREF1058_RS03095 0.88 -0.7 12,617 - +1.1 12,631 - -1.7 12,691 + +1.1 12,703 - +0.1 12,732 - +0.0 12,752 + -0.7 12,780 - -0.0 12,781 + -1.5 12,782 - +0.5 12,890 - +0.4 12,997 - +0.7 13,000 - +3.7 13,012 - -0.3 13,028 - +2.9 13,105 - -0.3 13,142 - +5.7 13,226 - HMPREF1058_RS03090 0.15 +0.7 13,255 + HMPREF1058_RS03090 0.17 +0.9 13,277 - HMPREF1058_RS03090 0.19 -0.5 13,381 + HMPREF1058_RS03090 0.26 +0.6 13,418 + HMPREF1058_RS03090 0.29 +2.7 13,418 + HMPREF1058_RS03090 0.29 +0.2 13,419 - HMPREF1058_RS03090 0.29 +0.1 13,421 - HMPREF1058_RS03090 0.29 +2.7 13,487 + HMPREF1058_RS03090 0.34 +0.7 13,488 - HMPREF1058_RS03090 0.34 -0.5 13,492 + HMPREF1058_RS03090 0.35 +0.6 13,493 - HMPREF1058_RS03090 0.35 +1.1 13,493 - HMPREF1058_RS03090 0.35 +1.9 13,498 - HMPREF1058_RS03090 0.35 +3.4 13,505 + HMPREF1058_RS03090 0.36 +3.1 13,506 - HMPREF1058_RS03090 0.36 +1.1 13,506 - HMPREF1058_RS03090 0.36 +4.0 13,564 + HMPREF1058_RS03090 0.40 +0.5 13,564 + HMPREF1058_RS03090 0.40 -0.1 13,611 - HMPREF1058_RS03090 0.43 -0.5 13,643 - HMPREF1058_RS03090 0.46 -0.5 13,675 + HMPREF1058_RS03090 0.48 +0.1 13,676 - HMPREF1058_RS03090 0.48 -0.1 13,723 - HMPREF1058_RS03090 0.52 +0.1 13,732 - HMPREF1058_RS03090 0.52 +0.9 13,763 - HMPREF1058_RS03090 0.55 +1.6 13,928 - +0.1 13,952 + HMPREF1058_RS03090 0.69 +0.6 13,963 + HMPREF1058_RS03090 0.69 +0.2 13,963 + HMPREF1058_RS03090 0.69 +1.4 13,964 - HMPREF1058_RS03090 0.69 -0.1 14,116 + HMPREF1058_RS03090 0.81 -1.5 14,220 + HMPREF1058_RS03090 0.88 -2.3 14,229 - HMPREF1058_RS03090 0.89 -1.1 14,229 - HMPREF1058_RS03090 0.89 -0.7 14,323 + +1.0 14,328 + -0.2 14,347 + +0.4 14,376 - +0.7 14,379 - +0.8 14,387 - +3.1 14,461 + -0.1 14,761 + HMPREF1058_RS03085 0.30 -0.1 14,812 + HMPREF1058_RS03085 0.38 -0.3 14,814 + HMPREF1058_RS03085 0.38 +0.4 14,824 + HMPREF1058_RS03085 0.40 -1.7 15,129 + HMPREF1058_RS03085 0.85 -2.6 15,262 - -0.1 15,322 + +2.2 15,335 + +0.2 15,347 + +0.4
Or see this region's nucleotide sequence