Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02725 and HMPREF1058_RS02720 are separated by 121 nucleotides HMPREF1058_RS02720 and HMPREF1058_RS02715 are separated by 11 nucleotides HMPREF1058_RS02715 and HMPREF1058_RS02710 are separated by 342 nucleotides
HMPREF1058_RS02725: HMPREF1058_RS02725 - DUF5060 domain-containing protein, at 116,508 to 118,112
_RS02725
HMPREF1058_RS02720: HMPREF1058_RS02720 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 118,234 to 118,848
_RS02720
HMPREF1058_RS02715: HMPREF1058_RS02715 - DeoR/GlpR transcriptional regulator, at 118,860 to 119,615
_RS02715
HMPREF1058_RS02710: HMPREF1058_RS02710 - transketolase, at 119,958 to 120,803
_RS02710
Position (kb) 118
119
120 Strain fitness (log2 ratio) -2
-1
0
1
2 at 117.963 kb on - strand at 118.081 kb on - strand at 118.083 kb on - strand at 118.096 kb on + strand at 118.209 kb on + strand at 118.221 kb on + strand at 118.248 kb on - strand at 118.398 kb on - strand, within HMPREF1058_RS02720 at 118.488 kb on + strand, within HMPREF1058_RS02720 at 118.488 kb on + strand, within HMPREF1058_RS02720 at 118.489 kb on - strand, within HMPREF1058_RS02720 at 118.519 kb on - strand, within HMPREF1058_RS02720 at 118.622 kb on + strand, within HMPREF1058_RS02720 at 118.622 kb on + strand, within HMPREF1058_RS02720 at 118.622 kb on + strand, within HMPREF1058_RS02720 at 118.623 kb on - strand, within HMPREF1058_RS02720 at 118.624 kb on + strand, within HMPREF1058_RS02720 at 118.624 kb on + strand, within HMPREF1058_RS02720 at 118.624 kb on + strand, within HMPREF1058_RS02720 at 118.625 kb on - strand, within HMPREF1058_RS02720 at 118.744 kb on - strand, within HMPREF1058_RS02720 at 118.839 kb on + strand at 118.852 kb on + strand at 118.852 kb on + strand at 118.859 kb on + strand at 118.859 kb on + strand at 118.888 kb on + strand at 119.002 kb on - strand at 119.127 kb on - strand, within HMPREF1058_RS02715 at 119.145 kb on - strand, within HMPREF1058_RS02715 at 119.146 kb on + strand, within HMPREF1058_RS02715 at 119.146 kb on + strand, within HMPREF1058_RS02715 at 119.147 kb on - strand, within HMPREF1058_RS02715 at 119.147 kb on - strand, within HMPREF1058_RS02715 at 119.166 kb on - strand, within HMPREF1058_RS02715 at 119.172 kb on - strand, within HMPREF1058_RS02715 at 119.191 kb on + strand, within HMPREF1058_RS02715 at 119.199 kb on + strand, within HMPREF1058_RS02715 at 119.199 kb on + strand, within HMPREF1058_RS02715 at 119.201 kb on + strand, within HMPREF1058_RS02715 at 119.303 kb on + strand, within HMPREF1058_RS02715 at 119.349 kb on - strand, within HMPREF1058_RS02715 at 119.350 kb on + strand, within HMPREF1058_RS02715 at 119.414 kb on + strand, within HMPREF1058_RS02715 at 119.415 kb on - strand, within HMPREF1058_RS02715 at 119.419 kb on + strand, within HMPREF1058_RS02715 at 119.449 kb on + strand, within HMPREF1058_RS02715 at 119.450 kb on - strand, within HMPREF1058_RS02715 at 119.544 kb on - strand at 119.547 kb on - strand at 119.549 kb on + strand at 119.561 kb on + strand at 119.562 kb on - strand at 119.596 kb on + strand at 119.620 kb on + strand at 119.634 kb on + strand at 119.795 kb on - strand at 119.796 kb on + strand at 119.814 kb on - strand at 119.819 kb on - strand at 119.819 kb on - strand at 119.843 kb on + strand at 120.021 kb on + strand at 120.022 kb on - strand at 120.024 kb on - strand at 120.065 kb on + strand, within HMPREF1058_RS02710 at 120.065 kb on + strand, within HMPREF1058_RS02710 at 120.093 kb on - strand, within HMPREF1058_RS02710 at 120.177 kb on + strand, within HMPREF1058_RS02710 at 120.177 kb on + strand, within HMPREF1058_RS02710 at 120.178 kb on - strand, within HMPREF1058_RS02710 at 120.245 kb on + strand, within HMPREF1058_RS02710 at 120.245 kb on + strand, within HMPREF1058_RS02710 at 120.268 kb on + strand, within HMPREF1058_RS02710 at 120.289 kb on + strand, within HMPREF1058_RS02710 at 120.366 kb on + strand, within HMPREF1058_RS02710 at 120.369 kb on - strand, within HMPREF1058_RS02710 at 120.379 kb on + strand, within HMPREF1058_RS02710 at 120.379 kb on + strand, within HMPREF1058_RS02710 at 120.380 kb on - strand, within HMPREF1058_RS02710 at 120.380 kb on - strand, within HMPREF1058_RS02710 at 120.413 kb on + strand, within HMPREF1058_RS02710 at 120.413 kb on + strand, within HMPREF1058_RS02710 at 120.417 kb on + strand, within HMPREF1058_RS02710 at 120.417 kb on + strand, within HMPREF1058_RS02710
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 117,963 - -0.7 118,081 - +1.0 118,083 - -0.7 118,096 + -0.8 118,209 + -0.4 118,221 + +0.0 118,248 - +0.2 118,398 - HMPREF1058_RS02720 0.27 -0.3 118,488 + HMPREF1058_RS02720 0.41 -1.4 118,488 + HMPREF1058_RS02720 0.41 -0.7 118,489 - HMPREF1058_RS02720 0.41 +0.1 118,519 - HMPREF1058_RS02720 0.46 +0.6 118,622 + HMPREF1058_RS02720 0.63 -1.0 118,622 + HMPREF1058_RS02720 0.63 -0.1 118,622 + HMPREF1058_RS02720 0.63 +0.2 118,623 - HMPREF1058_RS02720 0.63 -0.4 118,624 + HMPREF1058_RS02720 0.63 -0.5 118,624 + HMPREF1058_RS02720 0.63 +0.2 118,624 + HMPREF1058_RS02720 0.63 +0.9 118,625 - HMPREF1058_RS02720 0.64 +0.0 118,744 - HMPREF1058_RS02720 0.83 +0.9 118,839 + -0.5 118,852 + -0.5 118,852 + +0.3 118,859 + +1.3 118,859 + +0.7 118,888 + +1.1 119,002 - +0.3 119,127 - HMPREF1058_RS02715 0.35 -0.3 119,145 - HMPREF1058_RS02715 0.38 +0.8 119,146 + HMPREF1058_RS02715 0.38 +0.3 119,146 + HMPREF1058_RS02715 0.38 +2.0 119,147 - HMPREF1058_RS02715 0.38 +1.4 119,147 - HMPREF1058_RS02715 0.38 +1.2 119,166 - HMPREF1058_RS02715 0.40 +0.7 119,172 - HMPREF1058_RS02715 0.41 +0.7 119,191 + HMPREF1058_RS02715 0.44 +0.5 119,199 + HMPREF1058_RS02715 0.45 +1.2 119,199 + HMPREF1058_RS02715 0.45 +1.1 119,201 + HMPREF1058_RS02715 0.45 +0.9 119,303 + HMPREF1058_RS02715 0.59 +0.5 119,349 - HMPREF1058_RS02715 0.65 +0.8 119,350 + HMPREF1058_RS02715 0.65 +1.4 119,414 + HMPREF1058_RS02715 0.73 -0.1 119,415 - HMPREF1058_RS02715 0.73 +0.2 119,419 + HMPREF1058_RS02715 0.74 +1.1 119,449 + HMPREF1058_RS02715 0.78 +0.9 119,450 - HMPREF1058_RS02715 0.78 +0.8 119,544 - +0.6 119,547 - +0.1 119,549 + +2.6 119,561 + +1.7 119,562 - +0.3 119,596 + +1.9 119,620 + -0.6 119,634 + -0.5 119,795 - -1.9 119,796 + +0.0 119,814 - +0.0 119,819 - -1.1 119,819 - -0.4 119,843 + -0.4 120,021 + +0.6 120,022 - -0.7 120,024 - -0.8 120,065 + HMPREF1058_RS02710 0.13 +0.4 120,065 + HMPREF1058_RS02710 0.13 -0.1 120,093 - HMPREF1058_RS02710 0.16 -2.2 120,177 + HMPREF1058_RS02710 0.26 +0.1 120,177 + HMPREF1058_RS02710 0.26 -0.6 120,178 - HMPREF1058_RS02710 0.26 -0.2 120,245 + HMPREF1058_RS02710 0.34 +2.1 120,245 + HMPREF1058_RS02710 0.34 +0.4 120,268 + HMPREF1058_RS02710 0.37 +1.7 120,289 + HMPREF1058_RS02710 0.39 +0.1 120,366 + HMPREF1058_RS02710 0.48 +0.2 120,369 - HMPREF1058_RS02710 0.49 -0.1 120,379 + HMPREF1058_RS02710 0.50 -0.7 120,379 + HMPREF1058_RS02710 0.50 +1.0 120,380 - HMPREF1058_RS02710 0.50 +1.7 120,380 - HMPREF1058_RS02710 0.50 +0.1 120,413 + HMPREF1058_RS02710 0.54 +0.8 120,413 + HMPREF1058_RS02710 0.54 +0.8 120,417 + HMPREF1058_RS02710 0.54 +0.4 120,417 + HMPREF1058_RS02710 0.54 -0.0
Or see this region's nucleotide sequence