Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02710

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
119,002	-				+0.3
119,127	-		HMPREF1058_RS02715	0.35	-0.3
119,145	-		HMPREF1058_RS02715	0.38	+0.8
119,146	+		HMPREF1058_RS02715	0.38	+0.3
119,146	+		HMPREF1058_RS02715	0.38	+2.0
119,147	-		HMPREF1058_RS02715	0.38	+1.4
119,147	-		HMPREF1058_RS02715	0.38	+1.2
119,166	-		HMPREF1058_RS02715	0.40	+0.7
119,172	-		HMPREF1058_RS02715	0.41	+0.7
119,191	+		HMPREF1058_RS02715	0.44	+0.5
119,199	+		HMPREF1058_RS02715	0.45	+1.2
119,199	+		HMPREF1058_RS02715	0.45	+1.1
119,201	+		HMPREF1058_RS02715	0.45	+0.9
119,303	+		HMPREF1058_RS02715	0.59	+0.5
119,349	-		HMPREF1058_RS02715	0.65	+0.8
119,350	+		HMPREF1058_RS02715	0.65	+1.4
119,414	+		HMPREF1058_RS02715	0.73	-0.1
119,415	-		HMPREF1058_RS02715	0.73	+0.2
119,419	+		HMPREF1058_RS02715	0.74	+1.1
119,449	+		HMPREF1058_RS02715	0.78	+0.9
119,450	-		HMPREF1058_RS02715	0.78	+0.8
119,544	-				+0.6
119,547	-				+0.1
119,549	+				+2.6
119,561	+				+1.7
119,562	-				+0.3
119,596	+				+1.9
119,620	+				-0.6
119,634	+				-0.5
119,795	-				-1.9
119,796	+				+0.0
119,814	-				+0.0
119,819	-				-1.1
119,819	-				-0.4
119,843	+				-0.4
120,021	+				+0.6
120,022	-				-0.7
120,024	-				-0.8
120,065	+		HMPREF1058_RS02710	0.13	+0.4
120,065	+		HMPREF1058_RS02710	0.13	-0.1
120,093	-		HMPREF1058_RS02710	0.16	-2.2
120,177	+		HMPREF1058_RS02710	0.26	+0.1
120,177	+		HMPREF1058_RS02710	0.26	-0.6
120,178	-		HMPREF1058_RS02710	0.26	-0.2
120,245	+		HMPREF1058_RS02710	0.34	+2.1
120,245	+		HMPREF1058_RS02710	0.34	+0.4
120,268	+		HMPREF1058_RS02710	0.37	+1.7
120,289	+		HMPREF1058_RS02710	0.39	+0.1
120,366	+		HMPREF1058_RS02710	0.48	+0.2
120,369	-		HMPREF1058_RS02710	0.49	-0.1
120,379	+		HMPREF1058_RS02710	0.50	-0.7
120,379	+		HMPREF1058_RS02710	0.50	+1.0
120,380	-		HMPREF1058_RS02710	0.50	+1.7
120,380	-		HMPREF1058_RS02710	0.50	+0.1
120,413	+		HMPREF1058_RS02710	0.54	+0.8
120,413	+		HMPREF1058_RS02710	0.54	+0.8
120,417	+		HMPREF1058_RS02710	0.54	+0.4
120,417	+		HMPREF1058_RS02710	0.54	-0.0
120,626	+		HMPREF1058_RS02710	0.79	+3.6
120,633	-		HMPREF1058_RS02710	0.80	+0.0
120,662	+		HMPREF1058_RS02710	0.83	+2.2
120,663	-		HMPREF1058_RS02710	0.83	+1.6
120,684	+		HMPREF1058_RS02710	0.86	+0.1
120,684	+		HMPREF1058_RS02710	0.86	+3.1
120,684	+		HMPREF1058_RS02710	0.86	-0.5
120,685	-		HMPREF1058_RS02710	0.86	-1.3
120,805	-				-0.3
120,868	-				+0.2
120,904	-		HMPREF1058_RS02705	0.12	-0.3
121,019	+		HMPREF1058_RS02705	0.24	+0.5
121,020	-		HMPREF1058_RS02705	0.24	-0.1
121,020	-		HMPREF1058_RS02705	0.24	+0.7
121,039	+		HMPREF1058_RS02705	0.26	+0.8
121,083	+		HMPREF1058_RS02705	0.31	-0.5
121,234	-		HMPREF1058_RS02705	0.47	-1.0
121,234	-		HMPREF1058_RS02705	0.47	-1.2
121,274	-		HMPREF1058_RS02705	0.51	+1.0
121,277	+		HMPREF1058_RS02705	0.52	+1.2
121,278	-		HMPREF1058_RS02705	0.52	-1.0
121,278	-		HMPREF1058_RS02705	0.52	+0.7
121,351	-		HMPREF1058_RS02705	0.59	+0.3
121,431	-		HMPREF1058_RS02705	0.68	-0.8
121,751	-				+1.7
121,757	-				+0.5
121,770	+				-1.6
121,771	-				-1.5
121,779	+				-0.3
121,780	-				+0.2
121,790	-				+0.0