Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02535 and HMPREF1058_RS02530 are separated by 46 nucleotides HMPREF1058_RS02530 and HMPREF1058_RS02525 are separated by 17 nucleotides HMPREF1058_RS02525 and HMPREF1058_RS02520 are separated by 82 nucleotides
HMPREF1058_RS02535: HMPREF1058_RS02535 - imidazolonepropionase, at 160,254 to 161,498
_RS02535
HMPREF1058_RS02530: HMPREF1058_RS02530 - GxxExxY protein, at 161,545 to 161,931
_RS02530
HMPREF1058_RS02525: HMPREF1058_RS02525 - glutamate formimidoyltransferase, at 161,949 to 162,851
_RS02525
HMPREF1058_RS02520: HMPREF1058_RS02520 - urocanate hydratase, at 162,934 to 164,931
_RS02520
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.201 kb on + strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.202 kb on - strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.203 kb on + strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535 at 161.204 kb on - strand, within HMPREF1058_RS02535 at 161.295 kb on + strand, within HMPREF1058_RS02535 at 161.295 kb on + strand, within HMPREF1058_RS02535 at 161.296 kb on - strand at 161.362 kb on + strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.363 kb on - strand, within HMPREF1058_RS02535 at 161.366 kb on + strand, within HMPREF1058_RS02535 at 161.367 kb on - strand, within HMPREF1058_RS02535 at 161.369 kb on + strand, within HMPREF1058_RS02535 at 161.511 kb on + strand at 161.571 kb on + strand at 161.600 kb on - strand, within HMPREF1058_RS02530 at 161.608 kb on + strand, within HMPREF1058_RS02530 at 161.614 kb on + strand, within HMPREF1058_RS02530 at 161.693 kb on - strand, within HMPREF1058_RS02530 at 161.784 kb on + strand, within HMPREF1058_RS02530 at 161.785 kb on - strand, within HMPREF1058_RS02530 at 161.811 kb on - strand, within HMPREF1058_RS02530 at 161.811 kb on - strand, within HMPREF1058_RS02530 at 161.851 kb on + strand, within HMPREF1058_RS02530 at 161.862 kb on - strand, within HMPREF1058_RS02530 at 161.866 kb on + strand, within HMPREF1058_RS02530 at 161.882 kb on - strand, within HMPREF1058_RS02530 at 161.884 kb on + strand, within HMPREF1058_RS02530 at 161.893 kb on + strand at 161.894 kb on - strand at 161.911 kb on + strand at 161.940 kb on + strand at 161.940 kb on + strand at 161.945 kb on + strand at 161.946 kb on - strand at 161.946 kb on - strand at 161.946 kb on - strand at 161.951 kb on - strand at 162.008 kb on - strand at 162.010 kb on + strand at 162.259 kb on - strand, within HMPREF1058_RS02525 at 162.285 kb on + strand, within HMPREF1058_RS02525 at 162.285 kb on + strand, within HMPREF1058_RS02525 at 162.287 kb on + strand, within HMPREF1058_RS02525 at 162.293 kb on - strand, within HMPREF1058_RS02525 at 162.488 kb on + strand, within HMPREF1058_RS02525 at 162.488 kb on + strand, within HMPREF1058_RS02525 at 162.490 kb on + strand, within HMPREF1058_RS02525 at 162.548 kb on + strand, within HMPREF1058_RS02525 at 162.548 kb on + strand, within HMPREF1058_RS02525 at 162.577 kb on - strand, within HMPREF1058_RS02525 at 162.582 kb on + strand, within HMPREF1058_RS02525 at 162.582 kb on + strand, within HMPREF1058_RS02525 at 162.637 kb on - strand, within HMPREF1058_RS02525 at 162.643 kb on - strand, within HMPREF1058_RS02525 at 162.731 kb on + strand, within HMPREF1058_RS02525 at 162.731 kb on + strand, within HMPREF1058_RS02525 at 162.733 kb on + strand, within HMPREF1058_RS02525 at 162.851 kb on + strand at 162.870 kb on + strand at 162.870 kb on + strand at 162.873 kb on - strand at 162.959 kb on - strand at 162.959 kb on - strand at 162.967 kb on - strand at 163.096 kb on + strand at 163.097 kb on - strand at 163.126 kb on - strand at 163.153 kb on + strand, within HMPREF1058_RS02520 at 163.154 kb on - strand, within HMPREF1058_RS02520 at 163.182 kb on + strand, within HMPREF1058_RS02520 at 163.187 kb on - strand, within HMPREF1058_RS02520 at 163.187 kb on - strand, within HMPREF1058_RS02520 at 163.188 kb on + strand, within HMPREF1058_RS02520 at 163.192 kb on + strand, within HMPREF1058_RS02520 at 163.192 kb on + strand, within HMPREF1058_RS02520 at 163.193 kb on - strand, within HMPREF1058_RS02520 at 163.266 kb on + strand, within HMPREF1058_RS02520 at 163.266 kb on + strand, within HMPREF1058_RS02520 at 163.334 kb on - strand, within HMPREF1058_RS02520 at 163.619 kb on + strand, within HMPREF1058_RS02520 at 163.651 kb on + strand, within HMPREF1058_RS02520 at 163.656 kb on - strand, within HMPREF1058_RS02520 at 163.656 kb on - strand, within HMPREF1058_RS02520 at 163.724 kb on + strand, within HMPREF1058_RS02520 at 163.725 kb on - strand, within HMPREF1058_RS02520 at 163.763 kb on + strand, within HMPREF1058_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 161,201 + HMPREF1058_RS02535 0.76 -0.1 161,201 + HMPREF1058_RS02535 0.76 -0.8 161,202 - HMPREF1058_RS02535 0.76 +1.3 161,202 - HMPREF1058_RS02535 0.76 +0.1 161,203 + HMPREF1058_RS02535 0.76 -0.5 161,203 + HMPREF1058_RS02535 0.76 -0.5 161,204 - HMPREF1058_RS02535 0.76 +1.1 161,204 - HMPREF1058_RS02535 0.76 -0.4 161,295 + HMPREF1058_RS02535 0.84 -0.2 161,295 + HMPREF1058_RS02535 0.84 -1.7 161,296 - -1.0 161,362 + HMPREF1058_RS02535 0.89 +0.6 161,363 - HMPREF1058_RS02535 0.89 +1.7 161,363 - HMPREF1058_RS02535 0.89 -1.2 161,363 - HMPREF1058_RS02535 0.89 +0.6 161,366 + HMPREF1058_RS02535 0.89 -0.6 161,367 - HMPREF1058_RS02535 0.89 +0.7 161,369 + HMPREF1058_RS02535 0.90 +0.2 161,511 + -1.6 161,571 + -0.2 161,600 - HMPREF1058_RS02530 0.14 +0.1 161,608 + HMPREF1058_RS02530 0.16 -0.4 161,614 + HMPREF1058_RS02530 0.18 -0.5 161,693 - HMPREF1058_RS02530 0.38 -1.3 161,784 + HMPREF1058_RS02530 0.62 -0.1 161,785 - HMPREF1058_RS02530 0.62 -1.0 161,811 - HMPREF1058_RS02530 0.69 -1.5 161,811 - HMPREF1058_RS02530 0.69 +0.1 161,851 + HMPREF1058_RS02530 0.79 -1.1 161,862 - HMPREF1058_RS02530 0.82 -0.0 161,866 + HMPREF1058_RS02530 0.83 -0.7 161,882 - HMPREF1058_RS02530 0.87 +0.2 161,884 + HMPREF1058_RS02530 0.88 +0.5 161,893 + +0.7 161,894 - +0.2 161,911 + -1.0 161,940 + -0.1 161,940 + -0.1 161,945 + -0.6 161,946 - +0.8 161,946 - +0.3 161,946 - -0.7 161,951 - -0.6 162,008 - +2.2 162,010 + -0.3 162,259 - HMPREF1058_RS02525 0.34 +2.0 162,285 + HMPREF1058_RS02525 0.37 -0.4 162,285 + HMPREF1058_RS02525 0.37 -0.6 162,287 + HMPREF1058_RS02525 0.37 -1.1 162,293 - HMPREF1058_RS02525 0.38 +2.9 162,488 + HMPREF1058_RS02525 0.60 +2.7 162,488 + HMPREF1058_RS02525 0.60 -2.0 162,490 + HMPREF1058_RS02525 0.60 -0.3 162,548 + HMPREF1058_RS02525 0.66 -0.1 162,548 + HMPREF1058_RS02525 0.66 -0.2 162,577 - HMPREF1058_RS02525 0.70 +2.5 162,582 + HMPREF1058_RS02525 0.70 -0.0 162,582 + HMPREF1058_RS02525 0.70 +0.0 162,637 - HMPREF1058_RS02525 0.76 +2.0 162,643 - HMPREF1058_RS02525 0.77 +1.5 162,731 + HMPREF1058_RS02525 0.87 -0.7 162,731 + HMPREF1058_RS02525 0.87 +1.3 162,733 + HMPREF1058_RS02525 0.87 +0.3 162,851 + +0.2 162,870 + -0.3 162,870 + -2.8 162,873 - +0.6 162,959 - +1.2 162,959 - +1.5 162,967 - +2.7 163,096 + -2.2 163,097 - +0.5 163,126 - +0.8 163,153 + HMPREF1058_RS02520 0.11 -0.3 163,154 - HMPREF1058_RS02520 0.11 +0.5 163,182 + HMPREF1058_RS02520 0.12 -0.9 163,187 - HMPREF1058_RS02520 0.13 +0.9 163,187 - HMPREF1058_RS02520 0.13 -0.0 163,188 + HMPREF1058_RS02520 0.13 +0.3 163,192 + HMPREF1058_RS02520 0.13 -0.6 163,192 + HMPREF1058_RS02520 0.13 +0.5 163,193 - HMPREF1058_RS02520 0.13 +0.9 163,266 + HMPREF1058_RS02520 0.17 +1.3 163,266 + HMPREF1058_RS02520 0.17 +0.6 163,334 - HMPREF1058_RS02520 0.20 +0.6 163,619 + HMPREF1058_RS02520 0.34 +0.8 163,651 + HMPREF1058_RS02520 0.36 +0.1 163,656 - HMPREF1058_RS02520 0.36 +1.0 163,656 - HMPREF1058_RS02520 0.36 +1.4 163,724 + HMPREF1058_RS02520 0.40 -0.7 163,725 - HMPREF1058_RS02520 0.40 +1.3 163,763 + HMPREF1058_RS02520 0.41 -0.8
Or see this region's nucleotide sequence