Experiment: Vitafiber 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01655 and HMPREF1058_RS01650 are separated by 15 nucleotides HMPREF1058_RS01650 and HMPREF1058_RS01645 are separated by 71 nucleotides HMPREF1058_RS01645 and HMPREF1058_RS01640 are separated by 101 nucleotides
HMPREF1058_RS01655: HMPREF1058_RS01655 - DUF4296 domain-containing protein, at 75,128 to 76,102
_RS01655
HMPREF1058_RS01650: HMPREF1058_RS01650 - hypothetical protein, at 76,118 to 76,441
_RS01650
HMPREF1058_RS01645: HMPREF1058_RS01645 - RNA methyltransferase, at 76,513 to 77,268
_RS01645
HMPREF1058_RS01640: HMPREF1058_RS01640 - BamA/TamA family outer membrane protein, at 77,370 to 79,694
_RS01640
Position (kb) 76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 75.519 kb on + strand, within HMPREF1058_RS01655 at 75.519 kb on + strand, within HMPREF1058_RS01655 at 75.520 kb on - strand, within HMPREF1058_RS01655 at 75.524 kb on + strand, within HMPREF1058_RS01655 at 75.638 kb on + strand, within HMPREF1058_RS01655 at 75.639 kb on - strand, within HMPREF1058_RS01655 at 75.640 kb on + strand, within HMPREF1058_RS01655 at 75.640 kb on + strand, within HMPREF1058_RS01655 at 75.641 kb on - strand, within HMPREF1058_RS01655 at 75.641 kb on - strand, within HMPREF1058_RS01655 at 75.643 kb on - strand, within HMPREF1058_RS01655 at 75.643 kb on - strand, within HMPREF1058_RS01655 at 75.756 kb on - strand, within HMPREF1058_RS01655 at 75.757 kb on + strand, within HMPREF1058_RS01655 at 75.760 kb on - strand, within HMPREF1058_RS01655 at 75.809 kb on + strand, within HMPREF1058_RS01655 at 75.809 kb on + strand, within HMPREF1058_RS01655 at 75.810 kb on - strand, within HMPREF1058_RS01655 at 75.811 kb on + strand, within HMPREF1058_RS01655 at 75.811 kb on + strand, within HMPREF1058_RS01655 at 75.893 kb on - strand, within HMPREF1058_RS01655 at 76.146 kb on - strand at 76.171 kb on + strand, within HMPREF1058_RS01650 at 76.175 kb on + strand, within HMPREF1058_RS01650 at 76.175 kb on + strand, within HMPREF1058_RS01650 at 76.176 kb on - strand, within HMPREF1058_RS01650 at 76.176 kb on - strand, within HMPREF1058_RS01650 at 76.365 kb on + strand, within HMPREF1058_RS01650 at 76.365 kb on + strand, within HMPREF1058_RS01650 at 76.366 kb on - strand, within HMPREF1058_RS01650 at 76.378 kb on + strand, within HMPREF1058_RS01650 at 76.380 kb on + strand, within HMPREF1058_RS01650 at 76.381 kb on - strand, within HMPREF1058_RS01650 at 76.443 kb on - strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.491 kb on + strand at 76.505 kb on + strand at 76.614 kb on + strand, within HMPREF1058_RS01645 at 76.617 kb on - strand, within HMPREF1058_RS01645 at 76.619 kb on - strand, within HMPREF1058_RS01645 at 76.630 kb on + strand, within HMPREF1058_RS01645 at 76.847 kb on + strand, within HMPREF1058_RS01645 at 76.848 kb on - strand, within HMPREF1058_RS01645 at 76.878 kb on + strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.939 kb on + strand, within HMPREF1058_RS01645 at 76.940 kb on - strand, within HMPREF1058_RS01645 at 77.005 kb on + strand, within HMPREF1058_RS01645 at 77.006 kb on - strand, within HMPREF1058_RS01645 at 77.282 kb on + strand at 77.315 kb on + strand at 77.329 kb on - strand at 77.329 kb on - strand at 77.340 kb on + strand at 77.392 kb on - strand at 77.392 kb on - strand at 77.393 kb on + strand at 77.393 kb on + strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.394 kb on - strand at 77.395 kb on + strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.396 kb on - strand at 77.405 kb on + strand at 77.406 kb on - strand at 77.408 kb on + strand at 77.417 kb on - strand at 77.417 kb on - strand at 77.460 kb on + strand at 77.516 kb on - strand at 77.528 kb on + strand at 77.572 kb on + strand at 77.572 kb on + strand at 77.576 kb on + strand at 77.576 kb on + strand at 77.582 kb on + strand at 77.586 kb on + strand at 77.661 kb on + strand, within HMPREF1058_RS01640 at 77.661 kb on + strand, within HMPREF1058_RS01640 at 77.662 kb on - strand, within HMPREF1058_RS01640 at 77.714 kb on + strand, within HMPREF1058_RS01640 at 77.714 kb on + strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.715 kb on - strand, within HMPREF1058_RS01640 at 77.724 kb on + strand, within HMPREF1058_RS01640 at 77.724 kb on + strand, within HMPREF1058_RS01640 at 77.725 kb on - strand, within HMPREF1058_RS01640 at 77.784 kb on + strand, within HMPREF1058_RS01640 at 77.808 kb on + strand, within HMPREF1058_RS01640 at 77.810 kb on + strand, within HMPREF1058_RS01640 at 77.810 kb on + strand, within HMPREF1058_RS01640 at 77.815 kb on + strand, within HMPREF1058_RS01640 at 77.815 kb on + strand, within HMPREF1058_RS01640 at 77.829 kb on + strand, within HMPREF1058_RS01640 at 77.829 kb on + strand, within HMPREF1058_RS01640 at 77.845 kb on + strand at 77.850 kb on - strand, within HMPREF1058_RS01640 at 77.862 kb on - strand, within HMPREF1058_RS01640 at 77.974 kb on - strand, within HMPREF1058_RS01640 at 78.001 kb on - strand, within HMPREF1058_RS01640 at 78.023 kb on + strand, within HMPREF1058_RS01640 at 78.052 kb on + strand, within HMPREF1058_RS01640 at 78.052 kb on + strand, within HMPREF1058_RS01640 at 78.095 kb on + strand, within HMPREF1058_RS01640 at 78.096 kb on - strand, within HMPREF1058_RS01640 at 78.102 kb on + strand, within HMPREF1058_RS01640 at 78.161 kb on + strand, within HMPREF1058_RS01640 at 78.200 kb on + strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.201 kb on - strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.203 kb on + strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.204 kb on - strand, within HMPREF1058_RS01640 at 78.207 kb on + strand, within HMPREF1058_RS01640 at 78.207 kb on + strand, within HMPREF1058_RS01640 at 78.208 kb on - strand, within HMPREF1058_RS01640 at 78.208 kb on - strand, within HMPREF1058_RS01640 at 78.210 kb on + strand, within HMPREF1058_RS01640 at 78.211 kb on - strand, within HMPREF1058_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Vitafiber 10 mg/mL (C) remove 75,519 + HMPREF1058_RS01655 0.40 -0.3 75,519 + HMPREF1058_RS01655 0.40 -3.4 75,520 - HMPREF1058_RS01655 0.40 +0.1 75,524 + HMPREF1058_RS01655 0.41 -1.5 75,638 + HMPREF1058_RS01655 0.52 -0.7 75,639 - HMPREF1058_RS01655 0.52 +0.6 75,640 + HMPREF1058_RS01655 0.53 -2.5 75,640 + HMPREF1058_RS01655 0.53 -2.0 75,641 - HMPREF1058_RS01655 0.53 -4.2 75,641 - HMPREF1058_RS01655 0.53 -1.2 75,643 - HMPREF1058_RS01655 0.53 -0.3 75,643 - HMPREF1058_RS01655 0.53 +0.2 75,756 - HMPREF1058_RS01655 0.64 -0.8 75,757 + HMPREF1058_RS01655 0.65 -1.1 75,760 - HMPREF1058_RS01655 0.65 -1.6 75,809 + HMPREF1058_RS01655 0.70 -0.6 75,809 + HMPREF1058_RS01655 0.70 -0.6 75,810 - HMPREF1058_RS01655 0.70 +0.8 75,811 + HMPREF1058_RS01655 0.70 -0.9 75,811 + HMPREF1058_RS01655 0.70 -1.0 75,893 - HMPREF1058_RS01655 0.78 -0.9 76,146 - -1.8 76,171 + HMPREF1058_RS01650 0.16 -0.6 76,175 + HMPREF1058_RS01650 0.18 -2.6 76,175 + HMPREF1058_RS01650 0.18 -2.6 76,176 - HMPREF1058_RS01650 0.18 -3.2 76,176 - HMPREF1058_RS01650 0.18 -0.4 76,365 + HMPREF1058_RS01650 0.76 -1.5 76,365 + HMPREF1058_RS01650 0.76 -2.4 76,366 - HMPREF1058_RS01650 0.77 -0.8 76,378 + HMPREF1058_RS01650 0.80 -2.6 76,380 + HMPREF1058_RS01650 0.81 -3.6 76,381 - HMPREF1058_RS01650 0.81 -1.3 76,443 - +0.0 76,444 + +0.6 76,444 + -1.0 76,444 + -0.9 76,445 - +0.6 76,445 - +0.2 76,445 - -0.4 76,445 - -0.2 76,491 + +0.2 76,505 + +1.5 76,614 + HMPREF1058_RS01645 0.13 +1.5 76,617 - HMPREF1058_RS01645 0.14 +1.5 76,619 - HMPREF1058_RS01645 0.14 -0.4 76,630 + HMPREF1058_RS01645 0.15 +1.0 76,847 + HMPREF1058_RS01645 0.44 +3.2 76,848 - HMPREF1058_RS01645 0.44 +2.1 76,878 + HMPREF1058_RS01645 0.48 +0.9 76,879 - HMPREF1058_RS01645 0.48 +0.6 76,879 - HMPREF1058_RS01645 0.48 +2.9 76,939 + HMPREF1058_RS01645 0.56 -0.0 76,940 - HMPREF1058_RS01645 0.56 -1.5 77,005 + HMPREF1058_RS01645 0.65 +0.2 77,006 - HMPREF1058_RS01645 0.65 -1.1 77,282 + +0.4 77,315 + -0.3 77,329 - -0.1 77,329 - -0.8 77,340 + -0.1 77,392 - -0.3 77,392 - -0.8 77,393 + -0.4 77,393 + +1.5 77,394 - -0.7 77,394 - -1.3 77,394 - -0.5 77,394 - +0.2 77,395 + +0.7 77,396 - -1.3 77,396 - -0.6 77,396 - -2.2 77,396 - -1.5 77,405 + -2.8 77,406 - -0.1 77,408 + -3.0 77,417 - +1.9 77,417 - +0.2 77,460 + -1.8 77,516 - +1.1 77,528 + -1.4 77,572 + +1.1 77,572 + -0.4 77,576 + +1.1 77,576 + -1.3 77,582 + -0.0 77,586 + -1.8 77,661 + HMPREF1058_RS01640 0.13 -2.2 77,661 + HMPREF1058_RS01640 0.13 +0.5 77,662 - HMPREF1058_RS01640 0.13 +0.2 77,714 + HMPREF1058_RS01640 0.15 -0.8 77,714 + HMPREF1058_RS01640 0.15 -0.8 77,715 - HMPREF1058_RS01640 0.15 -0.6 77,715 - HMPREF1058_RS01640 0.15 -0.4 77,715 - HMPREF1058_RS01640 0.15 -1.1 77,724 + HMPREF1058_RS01640 0.15 -0.9 77,724 + HMPREF1058_RS01640 0.15 -2.4 77,725 - HMPREF1058_RS01640 0.15 -0.4 77,784 + HMPREF1058_RS01640 0.18 -2.1 77,808 + HMPREF1058_RS01640 0.19 -0.5 77,810 + HMPREF1058_RS01640 0.19 -1.9 77,810 + HMPREF1058_RS01640 0.19 -0.1 77,815 + HMPREF1058_RS01640 0.19 -3.0 77,815 + HMPREF1058_RS01640 0.19 +1.5 77,829 + HMPREF1058_RS01640 0.20 -1.3 77,829 + HMPREF1058_RS01640 0.20 -2.3 77,845 + -0.1 77,850 - HMPREF1058_RS01640 0.21 +0.7 77,862 - HMPREF1058_RS01640 0.21 -2.2 77,974 - HMPREF1058_RS01640 0.26 -0.3 78,001 - HMPREF1058_RS01640 0.27 -0.5 78,023 + HMPREF1058_RS01640 0.28 -0.8 78,052 + HMPREF1058_RS01640 0.29 -2.2 78,052 + HMPREF1058_RS01640 0.29 -2.1 78,095 + HMPREF1058_RS01640 0.31 -0.3 78,096 - HMPREF1058_RS01640 0.31 -2.3 78,102 + HMPREF1058_RS01640 0.31 -0.9 78,161 + HMPREF1058_RS01640 0.34 +0.1 78,200 + HMPREF1058_RS01640 0.36 -1.9 78,201 - HMPREF1058_RS01640 0.36 +1.1 78,201 - HMPREF1058_RS01640 0.36 -2.2 78,201 - HMPREF1058_RS01640 0.36 -0.1 78,203 + HMPREF1058_RS01640 0.36 +0.4 78,203 + HMPREF1058_RS01640 0.36 +0.5 78,203 + HMPREF1058_RS01640 0.36 -2.4 78,203 + HMPREF1058_RS01640 0.36 +1.5 78,204 - HMPREF1058_RS01640 0.36 -0.1 78,204 - HMPREF1058_RS01640 0.36 -1.6 78,204 - HMPREF1058_RS01640 0.36 -0.3 78,207 + HMPREF1058_RS01640 0.36 -0.2 78,207 + HMPREF1058_RS01640 0.36 -1.1 78,208 - HMPREF1058_RS01640 0.36 +0.1 78,208 - HMPREF1058_RS01640 0.36 +0.7 78,210 + HMPREF1058_RS01640 0.36 -1.8 78,211 - HMPREF1058_RS01640 0.36 +0.6
Or see this region's nucleotide sequence