Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01400

Experiment: Vitafiber 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vitafiber 10 mg/mL (C)
137,213	+		HMPREF1058_RS01405	0.26	-0.9
137,216	-		HMPREF1058_RS01405	0.26	-0.7
137,216	-		HMPREF1058_RS01405	0.26	+0.2
137,218	+		HMPREF1058_RS01405	0.26	+0.8
137,231	+		HMPREF1058_RS01405	0.27	+0.3
137,232	-		HMPREF1058_RS01405	0.28	+0.2
137,538	-		HMPREF1058_RS01405	0.51	+1.9
137,555	+		HMPREF1058_RS01405	0.52	-0.4
137,651	+		HMPREF1058_RS01405	0.59	+3.1
137,655	+		HMPREF1058_RS01405	0.59	-0.6
137,656	-		HMPREF1058_RS01405	0.59	-0.7
137,656	-		HMPREF1058_RS01405	0.59	-1.1
137,657	+		HMPREF1058_RS01405	0.60	-1.6
137,658	-		HMPREF1058_RS01405	0.60	-0.4
137,669	-		HMPREF1058_RS01405	0.60	-1.2
137,697	-		HMPREF1058_RS01405	0.63	+2.1
137,697	-		HMPREF1058_RS01405	0.63	-1.3
137,714	-		HMPREF1058_RS01405	0.64	-0.5
137,715	+		HMPREF1058_RS01405	0.64	+0.7
137,748	+		HMPREF1058_RS01405	0.66	-1.0
137,789	-		HMPREF1058_RS01405	0.69	+0.5
137,826	+		HMPREF1058_RS01405	0.72	-0.5
137,974	+		HMPREF1058_RS01405	0.83	+1.6
137,975	-		HMPREF1058_RS01405	0.83	-1.1
138,116	+				-0.3
138,116	+				-0.2
138,117	-				+0.6
138,121	-				-0.8
138,143	+				-1.3
138,144	-				-1.8
138,144	-				-0.3
138,151	+				+3.8
138,152	-				-0.1
138,292	+		HMPREF1058_RS01400	0.18	+0.1
138,293	-		HMPREF1058_RS01400	0.18	+2.6
138,293	-		HMPREF1058_RS01400	0.18	-0.8
138,336	+		HMPREF1058_RS01400	0.25	-0.3
138,517	+		HMPREF1058_RS01400	0.57	-0.4
138,518	-		HMPREF1058_RS01400	0.57	+1.1
138,641	-		HMPREF1058_RS01400	0.78	+0.9
138,744	-				+1.5
138,956	+		HMPREF1058_RS01395	0.13	-0.4
139,043	+		HMPREF1058_RS01395	0.19	+0.4
139,158	+		HMPREF1058_RS01395	0.26	+0.7
139,170	-		HMPREF1058_RS01395	0.27	+1.7
139,188	+		HMPREF1058_RS01395	0.28	-0.6
139,188	+		HMPREF1058_RS01395	0.28	-1.7
139,292	+		HMPREF1058_RS01395	0.35	+0.8
139,292	+		HMPREF1058_RS01395	0.35	-0.3
139,292	+		HMPREF1058_RS01395	0.35	-0.3
139,307	-		HMPREF1058_RS01395	0.36	-1.5
139,323	-		HMPREF1058_RS01395	0.37	+1.3
139,431	+		HMPREF1058_RS01395	0.45	+0.9
139,431	+		HMPREF1058_RS01395	0.45	+0.7
139,451	+		HMPREF1058_RS01395	0.46	+1.5
139,456	+		HMPREF1058_RS01395	0.46	+0.0
139,456	+		HMPREF1058_RS01395	0.46	-1.0
139,456	+		HMPREF1058_RS01395	0.46	+0.1
139,467	+		HMPREF1058_RS01395	0.47	-0.8
139,467	+		HMPREF1058_RS01395	0.47	-0.3
139,469	+		HMPREF1058_RS01395	0.47	-2.0
139,470	-		HMPREF1058_RS01395	0.47	-0.9
139,506	+		HMPREF1058_RS01395	0.50	-0.1
139,619	-		HMPREF1058_RS01395	0.57	+1.4
139,622	-		HMPREF1058_RS01395	0.57	-0.6
139,659	+		HMPREF1058_RS01395	0.60	+1.5