Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13335

Experiment: Yacontrol (Yacon root syrup) 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Yacontrol (Yacon root syrup) 10 mg/mL (C)
1,526,635	-		HMPREF1058_RS13345	0.73	-0.3
1,526,636	+		HMPREF1058_RS13345	0.73	-0.9
1,526,683	-		HMPREF1058_RS13345	0.76	-0.4
1,526,683	-		HMPREF1058_RS13345	0.76	-1.0
1,526,683	-		HMPREF1058_RS13345	0.76	-1.0
1,526,701	-		HMPREF1058_RS13345	0.78	-0.0
1,526,701	-		HMPREF1058_RS13345	0.78	+0.2
1,526,702	+		HMPREF1058_RS13345	0.78	-0.4
1,526,711	+		HMPREF1058_RS13345	0.78	-1.0
1,526,712	-		HMPREF1058_RS13345	0.78	-0.8
1,526,716	-		HMPREF1058_RS13345	0.79	-0.1
1,526,756	+		HMPREF1058_RS13345	0.81	-2.2
1,526,774	+		HMPREF1058_RS13345	0.83	-0.1
1,526,775	-		HMPREF1058_RS13345	0.83	-0.1
1,526,776	+		HMPREF1058_RS13345	0.83	-0.9
1,526,776	+		HMPREF1058_RS13345	0.83	-1.1
1,526,778	+		HMPREF1058_RS13345	0.83	-1.1
1,526,779	-		HMPREF1058_RS13345	0.83	-3.1
1,526,779	-		HMPREF1058_RS13345	0.83	-0.2
1,526,779	-		HMPREF1058_RS13345	0.83	+0.1
1,526,811	+		HMPREF1058_RS13345	0.85	-2.6
1,526,811	+		HMPREF1058_RS13345	0.85	-0.9
1,526,842	+		HMPREF1058_RS13345	0.87	-0.7
1,526,842	+		HMPREF1058_RS13345	0.87	+0.6
1,526,874	-		HMPREF1058_RS13345	0.89	-0.4
1,526,943	-				-0.9
1,526,978	+				-1.5
1,527,058	-				-0.1
1,527,061	+				+1.4
1,527,135	+				+0.3
1,527,155	+				-0.2
1,527,155	+				-1.1
1,527,155	+				+0.5
1,527,155	+				-0.7
1,527,156	-				+0.1
1,527,156	-				+0.8
1,527,156	-				-0.3
1,527,158	-				-1.0
1,527,159	+				-0.3
1,527,159	+				-0.2
1,527,164	+				-0.9
1,527,168	-		HMPREF1058_RS13340	0.10	-0.6
1,527,168	-		HMPREF1058_RS13340	0.10	-1.5
1,527,180	+		HMPREF1058_RS13340	0.13	-0.0
1,527,312	+		HMPREF1058_RS13340	0.48	+1.7
1,527,313	-		HMPREF1058_RS13340	0.48	-0.3
1,527,330	-		HMPREF1058_RS13340	0.53	+1.3
1,527,398	+		HMPREF1058_RS13340	0.71	+2.4
1,527,428	+		HMPREF1058_RS13340	0.79	+0.0
1,527,472	+				+0.2
1,527,473	-				-1.0
1,527,475	+				-1.9
1,527,475	+				-0.7
1,527,475	+				-1.1
1,527,475	+				+0.8
1,527,476	-				+0.1
1,527,477	+				-0.4
1,527,477	+				+0.1
1,527,477	+				+1.9
1,527,478	-				-1.9
1,527,478	-				-0.4
1,527,481	+				-1.6
1,527,482	-				-0.5
1,527,549	-				+1.2
1,527,619	+				-2.4
1,527,619	+				-1.8
1,527,627	+				-1.1
1,527,627	+				+2.0
1,527,628	-				-1.4
1,527,658	-		HMPREF1058_RS13335	0.13	-1.9
1,527,777	+		HMPREF1058_RS13335	0.47	-2.4
1,527,778	-		HMPREF1058_RS13335	0.48	-2.3
1,527,783	-		HMPREF1058_RS13335	0.49	-1.8
1,527,785	+		HMPREF1058_RS13335	0.50	-0.4
1,527,786	-		HMPREF1058_RS13335	0.50	-0.5
1,527,789	+		HMPREF1058_RS13335	0.51	-1.5
1,527,835	-		HMPREF1058_RS13335	0.64	-0.2
1,527,872	+		HMPREF1058_RS13335	0.74	-0.8
1,527,909	+		HMPREF1058_RS13335	0.85	-0.0
1,527,974	+				+0.1
1,527,982	-				-0.1
1,527,982	-				-0.6
1,528,012	+		HMPREF1058_RS13330	0.10	-0.6
1,528,012	+		HMPREF1058_RS13330	0.10	-0.7
1,528,120	-		HMPREF1058_RS13330	0.28	-0.3
1,528,230	+		HMPREF1058_RS13330	0.47	-0.1
1,528,230	+		HMPREF1058_RS13330	0.47	-1.9
1,528,230	+		HMPREF1058_RS13330	0.47	+0.1
1,528,251	+		HMPREF1058_RS13330	0.50	-0.6
1,528,252	-		HMPREF1058_RS13330	0.50	-0.6
1,528,252	-		HMPREF1058_RS13330	0.50	-0.1
1,528,277	+		HMPREF1058_RS13330	0.54	+0.2
1,528,277	+		HMPREF1058_RS13330	0.54	+0.4
1,528,278	-		HMPREF1058_RS13330	0.55	-0.0
1,528,278	-		HMPREF1058_RS13330	0.55	+0.9
1,528,289	-		HMPREF1058_RS13330	0.56	-1.1
1,528,312	+		HMPREF1058_RS13330	0.60	-2.5
1,528,373	+		HMPREF1058_RS13330	0.71	-0.8
1,528,409	+		HMPREF1058_RS13330	0.77	-1.6
1,528,409	+		HMPREF1058_RS13330	0.77	-1.0
1,528,409	+		HMPREF1058_RS13330	0.77	-1.6
1,528,409	-		HMPREF1058_RS13330	0.77	+0.1
1,528,411	+		HMPREF1058_RS13330	0.77	-0.9
1,528,451	-		HMPREF1058_RS13330	0.84	-0.3
1,528,565	-				-0.1
1,528,565	-				-0.7
1,528,617	-				-0.3
1,528,667	-				+0.6
1,528,667	-				-1.8
1,528,667	-				-0.7
1,528,677	+				-0.6
1,528,678	-				+1.2
1,528,698	-				-0.9
1,528,762	+		HMPREF1058_RS13325	0.14	-0.3
1,528,762	+		HMPREF1058_RS13325	0.14	-2.3
1,528,762	+		HMPREF1058_RS13325	0.14	-0.0
1,528,770	-		HMPREF1058_RS13325	0.14	-0.3
1,528,806	+		HMPREF1058_RS13325	0.17	-0.7
1,528,831	+		HMPREF1058_RS13325	0.18	-3.3
1,528,831	+		HMPREF1058_RS13325	0.18	-1.0
1,528,899	+		HMPREF1058_RS13325	0.23	-0.3
1,528,959	+		HMPREF1058_RS13325	0.27	-0.2
1,528,960	-		HMPREF1058_RS13325	0.27	-0.3
1,528,960	-		HMPREF1058_RS13325	0.27	-0.4
1,528,961	+		HMPREF1058_RS13325	0.27	-0.6