Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07050

Experiment: Bioecolians 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07055 and HMPREF1058_RS07050 are separated by 206 nucleotidesHMPREF1058_RS07050 and HMPREF1058_RS07045 are separated by 23 nucleotidesHMPREF1058_RS07045 and HMPREF1058_RS07040 are separated by 72 nucleotides HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525 _RS07055 HMPREF1058_RS07050: HMPREF1058_RS07050 - Holliday junction resolvase RuvX, at 327,732 to 328,151 _RS07050 HMPREF1058_RS07045: HMPREF1058_RS07045 - peptide deformylase, at 328,175 to 328,729 _RS07045 HMPREF1058_RS07040: HMPREF1058_RS07040 - tetratricopeptide repeat protein, at 328,802 to 330,811 _RS07040 Position (kb) 327 328 329Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 326.739 kb on + strand, within HMPREF1058_RS07055at 326.749 kb on + strand, within HMPREF1058_RS07055at 326.750 kb on - strand, within HMPREF1058_RS07055at 326.752 kb on - strand, within HMPREF1058_RS07055at 326.789 kb on - strand, within HMPREF1058_RS07055at 326.824 kb on + strand, within HMPREF1058_RS07055at 326.825 kb on - strand, within HMPREF1058_RS07055at 326.826 kb on + strand, within HMPREF1058_RS07055at 326.841 kb on - strand, within HMPREF1058_RS07055at 326.844 kb on + strand, within HMPREF1058_RS07055at 326.845 kb on - strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.847 kb on + strand, within HMPREF1058_RS07055at 326.850 kb on - strand, within HMPREF1058_RS07055at 326.878 kb on + strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.881 kb on - strand, within HMPREF1058_RS07055at 326.928 kb on - strand, within HMPREF1058_RS07055at 326.975 kb on + strand, within HMPREF1058_RS07055at 327.004 kb on + strand, within HMPREF1058_RS07055at 327.005 kb on - strand, within HMPREF1058_RS07055at 327.016 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.039 kb on + strand, within HMPREF1058_RS07055at 327.041 kb on + strand, within HMPREF1058_RS07055at 327.046 kb on + strand, within HMPREF1058_RS07055at 327.058 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.066 kb on + strand, within HMPREF1058_RS07055at 327.216 kb on + strand, within HMPREF1058_RS07055at 327.217 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.220 kb on - strand, within HMPREF1058_RS07055at 327.221 kb on + strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.222 kb on - strand, within HMPREF1058_RS07055at 327.274 kb on + strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.280 kb on - strand, within HMPREF1058_RS07055at 327.283 kb on + strand, within HMPREF1058_RS07055at 327.284 kb on - strand, within HMPREF1058_RS07055at 327.339 kb on - strand, within HMPREF1058_RS07055at 327.339 kb on - strand, within HMPREF1058_RS07055at 327.409 kb on + strandat 327.466 kb on - strandat 327.466 kb on - strandat 327.469 kb on + strandat 327.471 kb on + strandat 327.472 kb on - strandat 327.472 kb on - strandat 327.528 kb on + strandat 327.570 kb on - strandat 327.686 kb on + strandat 327.689 kb on - strandat 327.698 kb on - strandat 327.731 kb on + strandat 328.143 kb on + strandat 328.749 kb on + strandat 328.750 kb on - strandat 328.750 kb on - strandat 328.793 kb on - strandat 328.793 kb on - strandat 328.820 kb on + strandat 328.821 kb on - strandat 328.823 kb on - strandat 328.823 kb on - strandat 328.827 kb on + strandat 328.827 kb on + strandat 328.828 kb on - strandat 328.830 kb on + strandat 328.863 kb on + strandat 328.904 kb on + strandat 328.905 kb on - strandat 328.916 kb on + strandat 328.917 kb on - strandat 328.917 kb on - strandat 328.964 kb on + strandat 328.985 kb on + strandat 329.050 kb on + strand, within HMPREF1058_RS07040at 329.073 kb on + strand, within HMPREF1058_RS07040at 329.116 kb on + strand, within HMPREF1058_RS07040at 329.133 kb on + strand, within HMPREF1058_RS07040at 329.143 kb on + strand, within HMPREF1058_RS07040at 329.144 kb on - strand, within HMPREF1058_RS07040at 329.144 kb on - strand, within HMPREF1058_RS07040

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Per-strain Table

Position Strand Gene LocusTag Fraction Bioecolians 10 mg/mL (C)
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326,739 + HMPREF1058_RS07055 0.36 -2.4
326,749 + HMPREF1058_RS07055 0.37 -1.0
326,750 - HMPREF1058_RS07055 0.37 -1.1
326,752 - HMPREF1058_RS07055 0.38 -0.6
326,789 - HMPREF1058_RS07055 0.41 -1.0
326,824 + HMPREF1058_RS07055 0.43 -2.6
326,825 - HMPREF1058_RS07055 0.43 -1.8
326,826 + HMPREF1058_RS07055 0.44 -0.9
326,841 - HMPREF1058_RS07055 0.45 -0.9
326,844 + HMPREF1058_RS07055 0.45 -1.3
326,845 - HMPREF1058_RS07055 0.45 -1.2
326,847 + HMPREF1058_RS07055 0.45 -0.5
326,847 + HMPREF1058_RS07055 0.45 -1.0
326,847 + HMPREF1058_RS07055 0.45 -1.3
326,850 - HMPREF1058_RS07055 0.45 +0.3
326,878 + HMPREF1058_RS07055 0.48 +0.0
326,881 - HMPREF1058_RS07055 0.48 +0.1
326,881 - HMPREF1058_RS07055 0.48 -0.3
326,881 - HMPREF1058_RS07055 0.48 -0.5
326,881 - HMPREF1058_RS07055 0.48 -1.1
326,928 - HMPREF1058_RS07055 0.52 +0.5
326,975 + HMPREF1058_RS07055 0.56 -0.9
327,004 + HMPREF1058_RS07055 0.58 -0.7
327,005 - HMPREF1058_RS07055 0.58 -0.5
327,016 + HMPREF1058_RS07055 0.59 -2.9
327,039 + HMPREF1058_RS07055 0.61 -2.5
327,039 + HMPREF1058_RS07055 0.61 -2.6
327,041 + HMPREF1058_RS07055 0.61 +1.7
327,046 + HMPREF1058_RS07055 0.61 -1.1
327,058 + HMPREF1058_RS07055 0.62 -1.5
327,066 + HMPREF1058_RS07055 0.63 -1.3
327,066 + HMPREF1058_RS07055 0.63 +1.0
327,216 + HMPREF1058_RS07055 0.75 -1.3
327,217 - HMPREF1058_RS07055 0.75 -2.9
327,220 - HMPREF1058_RS07055 0.75 -2.4
327,220 - HMPREF1058_RS07055 0.75 -2.2
327,220 - HMPREF1058_RS07055 0.75 -1.0
327,221 + HMPREF1058_RS07055 0.75 -1.4
327,222 - HMPREF1058_RS07055 0.75 -2.5
327,222 - HMPREF1058_RS07055 0.75 -0.2
327,274 + HMPREF1058_RS07055 0.80 -1.3
327,280 - HMPREF1058_RS07055 0.80 -0.2
327,280 - HMPREF1058_RS07055 0.80 -0.2
327,280 - HMPREF1058_RS07055 0.80 -0.4
327,283 + HMPREF1058_RS07055 0.80 -0.5
327,284 - HMPREF1058_RS07055 0.80 -1.2
327,339 - HMPREF1058_RS07055 0.85 -0.7
327,339 - HMPREF1058_RS07055 0.85 -1.5
327,409 + -2.7
327,466 - -1.0
327,466 - -1.4
327,469 + -2.2
327,471 + -2.0
327,472 - -2.6
327,472 - +0.3
327,528 + -1.1
327,570 - -1.4
327,686 + +0.8
327,689 - -1.9
327,698 - +0.8
327,731 + +1.0
328,143 + -1.3
328,749 + -1.0
328,750 - -3.0
328,750 - -1.9
328,793 - -4.5
328,793 - -3.3
328,820 + -5.0
328,821 - -5.0
328,823 - -6.3
328,823 - -5.3
328,827 + -4.7
328,827 + -2.7
328,828 - -3.8
328,830 + -4.1
328,863 + -4.3
328,904 + -1.8
328,905 - -5.2
328,916 + -4.1
328,917 - -4.0
328,917 - -5.1
328,964 + -3.4
328,985 + -2.0
329,050 + HMPREF1058_RS07040 0.12 -5.0
329,073 + HMPREF1058_RS07040 0.13 -3.0
329,116 + HMPREF1058_RS07040 0.16 -2.9
329,133 + HMPREF1058_RS07040 0.16 +0.1
329,143 + HMPREF1058_RS07040 0.17 -3.4
329,144 - HMPREF1058_RS07040 0.17 -3.8
329,144 - HMPREF1058_RS07040 0.17 -2.8

Or see this region's nucleotide sequence