Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05000

Experiment: Bioecolians 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05010 and HMPREF1058_RS05005 are separated by 133 nucleotidesHMPREF1058_RS05005 and HMPREF1058_RS05000 are separated by 77 nucleotidesHMPREF1058_RS05000 and HMPREF1058_RS04995 are separated by 91 nucleotides HMPREF1058_RS05010: HMPREF1058_RS05010 - hypothetical protein, at 268,558 to 269,067 _RS05010 HMPREF1058_RS05005: HMPREF1058_RS05005 - hypothetical protein, at 269,201 to 269,683 _RS05005 HMPREF1058_RS05000: HMPREF1058_RS05000 - DUF4010 domain-containing protein, at 269,761 to 271,050 _RS05000 HMPREF1058_RS04995: HMPREF1058_RS04995 - putative sulfate exporter family transporter, at 271,142 to 272,128 _RS04995 Position (kb) 269 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.792 kb on + strand, within HMPREF1058_RS05010at 268.793 kb on - strand, within HMPREF1058_RS05010at 268.800 kb on + strand, within HMPREF1058_RS05010at 268.801 kb on - strand, within HMPREF1058_RS05010at 268.811 kb on - strand, within HMPREF1058_RS05010at 268.842 kb on + strand, within HMPREF1058_RS05010at 268.892 kb on + strand, within HMPREF1058_RS05010at 268.896 kb on + strand, within HMPREF1058_RS05010at 268.897 kb on - strand, within HMPREF1058_RS05010at 268.897 kb on - strand, within HMPREF1058_RS05010at 268.899 kb on - strand, within HMPREF1058_RS05010at 268.906 kb on + strand, within HMPREF1058_RS05010at 268.910 kb on - strandat 268.935 kb on + strand, within HMPREF1058_RS05010at 268.935 kb on + strand, within HMPREF1058_RS05010at 268.987 kb on - strand, within HMPREF1058_RS05010at 269.072 kb on - strandat 269.072 kb on - strandat 269.072 kb on - strandat 269.086 kb on + strandat 269.087 kb on - strandat 269.087 kb on - strandat 269.099 kb on + strandat 269.112 kb on + strandat 269.169 kb on + strandat 269.294 kb on + strand, within HMPREF1058_RS05005at 269.513 kb on - strand, within HMPREF1058_RS05005at 269.517 kb on + strand, within HMPREF1058_RS05005at 269.517 kb on + strand, within HMPREF1058_RS05005at 269.555 kb on - strand, within HMPREF1058_RS05005at 269.745 kb on + strandat 269.799 kb on + strandat 269.908 kb on - strand, within HMPREF1058_RS05000at 269.940 kb on + strand, within HMPREF1058_RS05000at 269.942 kb on + strand, within HMPREF1058_RS05000at 269.943 kb on - strand, within HMPREF1058_RS05000at 269.943 kb on - strand, within HMPREF1058_RS05000at 269.953 kb on - strand, within HMPREF1058_RS05000at 269.967 kb on - strand, within HMPREF1058_RS05000at 269.994 kb on + strand, within HMPREF1058_RS05000at 270.013 kb on + strand, within HMPREF1058_RS05000at 270.013 kb on + strand, within HMPREF1058_RS05000at 270.014 kb on - strand, within HMPREF1058_RS05000at 270.016 kb on + strand, within HMPREF1058_RS05000at 270.080 kb on - strand, within HMPREF1058_RS05000at 270.084 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.185 kb on + strand, within HMPREF1058_RS05000at 270.186 kb on - strand, within HMPREF1058_RS05000at 270.344 kb on - strand, within HMPREF1058_RS05000at 270.418 kb on + strand, within HMPREF1058_RS05000at 270.419 kb on - strand, within HMPREF1058_RS05000at 270.490 kb on + strand, within HMPREF1058_RS05000at 270.491 kb on - strand, within HMPREF1058_RS05000at 270.495 kb on - strand, within HMPREF1058_RS05000at 270.552 kb on + strand, within HMPREF1058_RS05000at 270.555 kb on - strand, within HMPREF1058_RS05000at 270.630 kb on - strand, within HMPREF1058_RS05000at 270.648 kb on + strand, within HMPREF1058_RS05000at 270.648 kb on + strand, within HMPREF1058_RS05000at 270.651 kb on + strand, within HMPREF1058_RS05000at 270.652 kb on - strand, within HMPREF1058_RS05000at 270.654 kb on - strand, within HMPREF1058_RS05000at 270.737 kb on + strand, within HMPREF1058_RS05000at 270.747 kb on - strand, within HMPREF1058_RS05000at 270.768 kb on + strand, within HMPREF1058_RS05000at 270.769 kb on - strand, within HMPREF1058_RS05000at 270.769 kb on - strand, within HMPREF1058_RS05000at 270.845 kb on + strand, within HMPREF1058_RS05000at 270.858 kb on - strand, within HMPREF1058_RS05000at 270.887 kb on + strand, within HMPREF1058_RS05000at 270.897 kb on + strand, within HMPREF1058_RS05000at 270.933 kb on + strandat 270.933 kb on + strandat 270.940 kb on + strandat 270.983 kb on - strandat 271.026 kb on - strandat 271.031 kb on + strandat 271.031 kb on + strandat 271.040 kb on - strandat 271.115 kb on - strandat 271.125 kb on - strandat 271.156 kb on + strandat 271.156 kb on + strandat 271.157 kb on - strandat 271.157 kb on - strandat 271.157 kb on - strandat 271.235 kb on + strandat 271.236 kb on - strandat 271.273 kb on + strand, within HMPREF1058_RS04995at 271.289 kb on - strand, within HMPREF1058_RS04995at 271.342 kb on - strand, within HMPREF1058_RS04995at 271.346 kb on - strand, within HMPREF1058_RS04995at 271.371 kb on + strand, within HMPREF1058_RS04995at 271.546 kb on + strand, within HMPREF1058_RS04995at 271.547 kb on - strand, within HMPREF1058_RS04995at 271.594 kb on + strand, within HMPREF1058_RS04995at 271.595 kb on - strand, within HMPREF1058_RS04995at 271.649 kb on - strand, within HMPREF1058_RS04995at 271.745 kb on - strand, within HMPREF1058_RS04995at 271.766 kb on + strand, within HMPREF1058_RS04995at 271.767 kb on - strand, within HMPREF1058_RS04995at 271.767 kb on - strand, within HMPREF1058_RS04995at 271.767 kb on - strand, within HMPREF1058_RS04995at 271.795 kb on + strand, within HMPREF1058_RS04995at 271.795 kb on + strand, within HMPREF1058_RS04995at 271.795 kb on + strand, within HMPREF1058_RS04995at 271.796 kb on - strand, within HMPREF1058_RS04995at 271.799 kb on + strand, within HMPREF1058_RS04995at 271.799 kb on + strand, within HMPREF1058_RS04995at 271.800 kb on - strand, within HMPREF1058_RS04995at 271.800 kb on - strand, within HMPREF1058_RS04995at 271.918 kb on - strand, within HMPREF1058_RS04995at 271.918 kb on - strand, within HMPREF1058_RS04995at 271.922 kb on - strand, within HMPREF1058_RS04995at 271.943 kb on - strand, within HMPREF1058_RS04995at 272.038 kb on + strandat 272.040 kb on + strandat 272.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bioecolians 10 mg/mL (C)
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268,792 + HMPREF1058_RS05010 0.46 -2.0
268,793 - HMPREF1058_RS05010 0.46 -0.6
268,800 + HMPREF1058_RS05010 0.47 -1.0
268,801 - HMPREF1058_RS05010 0.48 +0.5
268,811 - HMPREF1058_RS05010 0.50 +0.3
268,842 + HMPREF1058_RS05010 0.56 -0.3
268,892 + HMPREF1058_RS05010 0.65 -1.8
268,896 + HMPREF1058_RS05010 0.66 -1.6
268,897 - HMPREF1058_RS05010 0.66 +0.2
268,897 - HMPREF1058_RS05010 0.66 -1.2
268,899 - HMPREF1058_RS05010 0.67 +1.3
268,906 + HMPREF1058_RS05010 0.68 -2.7
268,910 - -0.4
268,935 + HMPREF1058_RS05010 0.74 -2.5
268,935 + HMPREF1058_RS05010 0.74 -2.2
268,987 - HMPREF1058_RS05010 0.84 +0.4
269,072 - +0.8
269,072 - +0.0
269,072 - -0.6
269,086 + -1.9
269,087 - +0.7
269,087 - +2.3
269,099 + -1.8
269,112 + -2.1
269,169 + -1.3
269,294 + HMPREF1058_RS05005 0.19 +0.7
269,513 - HMPREF1058_RS05005 0.65 +0.5
269,517 + HMPREF1058_RS05005 0.65 -0.6
269,517 + HMPREF1058_RS05005 0.65 -2.4
269,555 - HMPREF1058_RS05005 0.73 +0.1
269,745 + -0.4
269,799 + -0.6
269,908 - HMPREF1058_RS05000 0.11 -0.1
269,940 + HMPREF1058_RS05000 0.14 +1.2
269,942 + HMPREF1058_RS05000 0.14 +1.0
269,943 - HMPREF1058_RS05000 0.14 +0.2
269,943 - HMPREF1058_RS05000 0.14 -1.8
269,953 - HMPREF1058_RS05000 0.15 +0.1
269,967 - HMPREF1058_RS05000 0.16 -1.4
269,994 + HMPREF1058_RS05000 0.18 -0.2
270,013 + HMPREF1058_RS05000 0.20 -1.3
270,013 + HMPREF1058_RS05000 0.20 -2.0
270,014 - HMPREF1058_RS05000 0.20 -0.6
270,016 + HMPREF1058_RS05000 0.20 +1.8
270,080 - HMPREF1058_RS05000 0.25 -0.9
270,084 + HMPREF1058_RS05000 0.25 -0.2
270,102 + HMPREF1058_RS05000 0.26 -3.5
270,102 + HMPREF1058_RS05000 0.26 -1.2
270,102 + HMPREF1058_RS05000 0.26 +0.4
270,185 + HMPREF1058_RS05000 0.33 -2.6
270,186 - HMPREF1058_RS05000 0.33 -0.1
270,344 - HMPREF1058_RS05000 0.45 +0.5
270,418 + HMPREF1058_RS05000 0.51 -0.2
270,419 - HMPREF1058_RS05000 0.51 -0.4
270,490 + HMPREF1058_RS05000 0.57 -0.4
270,491 - HMPREF1058_RS05000 0.57 -0.7
270,495 - HMPREF1058_RS05000 0.57 +2.0
270,552 + HMPREF1058_RS05000 0.61 +0.2
270,555 - HMPREF1058_RS05000 0.62 +0.2
270,630 - HMPREF1058_RS05000 0.67 -0.5
270,648 + HMPREF1058_RS05000 0.69 +1.4
270,648 + HMPREF1058_RS05000 0.69 -1.2
270,651 + HMPREF1058_RS05000 0.69 -0.0
270,652 - HMPREF1058_RS05000 0.69 +0.4
270,654 - HMPREF1058_RS05000 0.69 -0.5
270,737 + HMPREF1058_RS05000 0.76 -0.2
270,747 - HMPREF1058_RS05000 0.76 -2.2
270,768 + HMPREF1058_RS05000 0.78 -2.6
270,769 - HMPREF1058_RS05000 0.78 -1.4
270,769 - HMPREF1058_RS05000 0.78 -0.6
270,845 + HMPREF1058_RS05000 0.84 -0.9
270,858 - HMPREF1058_RS05000 0.85 -2.4
270,887 + HMPREF1058_RS05000 0.87 -0.7
270,897 + HMPREF1058_RS05000 0.88 -2.2
270,933 + -0.6
270,933 + +1.2
270,940 + -0.8
270,983 - -0.5
271,026 - -1.1
271,031 + +0.0
271,031 + -0.5
271,040 - +0.5
271,115 - +0.6
271,125 - -0.7
271,156 + -0.6
271,156 + -1.3
271,157 - -0.5
271,157 - +0.8
271,157 - -0.9
271,235 + -0.4
271,236 - -0.2
271,273 + HMPREF1058_RS04995 0.13 -2.0
271,289 - HMPREF1058_RS04995 0.15 -0.5
271,342 - HMPREF1058_RS04995 0.20 -0.7
271,346 - HMPREF1058_RS04995 0.21 -0.9
271,371 + HMPREF1058_RS04995 0.23 +0.6
271,546 + HMPREF1058_RS04995 0.41 -1.0
271,547 - HMPREF1058_RS04995 0.41 -1.0
271,594 + HMPREF1058_RS04995 0.46 -0.7
271,595 - HMPREF1058_RS04995 0.46 -1.4
271,649 - HMPREF1058_RS04995 0.51 -1.4
271,745 - HMPREF1058_RS04995 0.61 -0.8
271,766 + HMPREF1058_RS04995 0.63 -0.7
271,767 - HMPREF1058_RS04995 0.63 -0.2
271,767 - HMPREF1058_RS04995 0.63 -0.6
271,767 - HMPREF1058_RS04995 0.63 -0.3
271,795 + HMPREF1058_RS04995 0.66 -0.6
271,795 + HMPREF1058_RS04995 0.66 +0.2
271,795 + HMPREF1058_RS04995 0.66 -0.9
271,796 - HMPREF1058_RS04995 0.66 +0.8
271,799 + HMPREF1058_RS04995 0.67 +0.8
271,799 + HMPREF1058_RS04995 0.67 -0.8
271,800 - HMPREF1058_RS04995 0.67 -1.1
271,800 - HMPREF1058_RS04995 0.67 -0.7
271,918 - HMPREF1058_RS04995 0.79 +1.4
271,918 - HMPREF1058_RS04995 0.79 -0.7
271,922 - HMPREF1058_RS04995 0.79 -2.3
271,943 - HMPREF1058_RS04995 0.81 +1.0
272,038 + +0.8
272,040 + -0.1
272,041 - +0.2

Or see this region's nucleotide sequence