Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00195

Experiment: tomato xylem local (total stem)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS00185 and RALBFv3_RS00190 overlap by 4 nucleotidesRALBFv3_RS00190 and RALBFv3_RS00195 are separated by 70 nucleotidesRALBFv3_RS00195 and RALBFv3_RS00200 are separated by 65 nucleotides RALBFv3_RS00185: RALBFv3_RS00185 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 39,384 to 40,115 _RS00185 RALBFv3_RS00190: RALBFv3_RS00190 - ribosomal-protein-alanine N-acetyltransferase, at 40,112 to 40,639 _RS00190 RALBFv3_RS00195: RALBFv3_RS00195 - uracil-DNA glycosylase, at 40,710 to 41,555 _RS00195 RALBFv3_RS00200: RALBFv3_RS00200 - lysophospholipid transporter LplT, at 41,621 to 42,937 _RS00200 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1at 40.560 kb on - strand, within RALBFv3_RS00190at 41.554 kb on - strandat 41.779 kb on - strand, within RALBFv3_RS00200at 41.952 kb on + strand, within RALBFv3_RS00200at 42.012 kb on + strand, within RALBFv3_RS00200at 42.394 kb on - strand, within RALBFv3_RS00200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction tomato xylem local (total stem)
remove
40,560 - RALBFv3_RS00190 0.85 -0.5
41,554 - -1.0
41,779 - RALBFv3_RS00200 0.12 -2.1
41,952 + RALBFv3_RS00200 0.25 -3.3
42,012 + RALBFv3_RS00200 0.30 +0.8
42,394 - RALBFv3_RS00200 0.59 -2.9

Or see this region's nucleotide sequence