Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15300 and HMPREF1058_RS20480 are separated by 312 nucleotides HMPREF1058_RS20480 and HMPREF1058_RS20485 are separated by 141 nucleotides HMPREF1058_RS20485 and HMPREF1058_RS15290 are separated by 205 nucleotides
HMPREF1058_RS15300: HMPREF1058_RS15300 - DUF3575 domain-containing protein, at 957,441 to 958,037
_RS15300
HMPREF1058_RS20480: HMPREF1058_RS20480 - site-specific integrase, at 958,350 to 958,710
_RS20480
HMPREF1058_RS20485: HMPREF1058_RS20485 - mobilization protein, at 958,852 to 959,061
_RS20485
HMPREF1058_RS15290: HMPREF1058_RS15290 - hypothetical protein, at 959,267 to 960,478
_RS15290
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 958.086 kb on + strand at 958.146 kb on - strand at 958.146 kb on - strand at 958.284 kb on - strand at 958.284 kb on - strand at 958.307 kb on - strand at 958.317 kb on + strand at 958.318 kb on - strand at 958.321 kb on + strand at 958.349 kb on + strand at 958.426 kb on + strand, within HMPREF1058_RS20480 at 958.427 kb on - strand, within HMPREF1058_RS20480 at 958.427 kb on - strand, within HMPREF1058_RS20480 at 958.429 kb on - strand, within HMPREF1058_RS20480 at 958.434 kb on + strand, within HMPREF1058_RS20480 at 958.435 kb on - strand, within HMPREF1058_RS20480 at 958.469 kb on - strand, within HMPREF1058_RS20480 at 958.585 kb on + strand, within HMPREF1058_RS20480 at 958.586 kb on + strand, within HMPREF1058_RS20480 at 958.587 kb on - strand, within HMPREF1058_RS20480 at 958.587 kb on - strand, within HMPREF1058_RS20480 at 958.587 kb on - strand, within HMPREF1058_RS20480 at 958.607 kb on - strand, within HMPREF1058_RS20480 at 958.627 kb on - strand, within HMPREF1058_RS20480 at 958.726 kb on + strand at 958.727 kb on - strand at 958.728 kb on + strand at 958.728 kb on + strand at 958.729 kb on - strand at 958.729 kb on - strand at 958.783 kb on + strand at 958.873 kb on - strand, within HMPREF1058_RS20485 at 958.950 kb on + strand, within HMPREF1058_RS20485 at 958.951 kb on - strand, within HMPREF1058_RS20485 at 959.158 kb on - strand at 959.172 kb on - strand at 959.172 kb on - strand at 959.175 kb on + strand at 959.176 kb on - strand at 959.241 kb on - strand at 959.241 kb on - strand at 959.298 kb on + strand at 959.414 kb on + strand, within HMPREF1058_RS15290 at 959.446 kb on + strand, within HMPREF1058_RS15290 at 959.446 kb on + strand, within HMPREF1058_RS15290 at 959.446 kb on + strand, within HMPREF1058_RS15290 at 959.449 kb on - strand, within HMPREF1058_RS15290 at 959.503 kb on + strand, within HMPREF1058_RS15290 at 959.507 kb on + strand, within HMPREF1058_RS15290 at 959.508 kb on - strand, within HMPREF1058_RS15290 at 959.508 kb on - strand, within HMPREF1058_RS15290 at 959.594 kb on + strand, within HMPREF1058_RS15290 at 959.642 kb on - strand, within HMPREF1058_RS15290 at 959.642 kb on - strand, within HMPREF1058_RS15290 at 959.642 kb on - strand, within HMPREF1058_RS15290 at 959.642 kb on - strand, within HMPREF1058_RS15290 at 959.674 kb on + strand, within HMPREF1058_RS15290 at 959.817 kb on + strand, within HMPREF1058_RS15290 at 959.830 kb on + strand, within HMPREF1058_RS15290 at 959.862 kb on - strand, within HMPREF1058_RS15290 at 959.865 kb on - strand, within HMPREF1058_RS15290 at 959.872 kb on + strand, within HMPREF1058_RS15290 at 960.038 kb on + strand, within HMPREF1058_RS15290 at 960.056 kb on - strand, within HMPREF1058_RS15290
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 958,086 + -0.3 958,146 - +2.6 958,146 - +1.3 958,284 - +3.3 958,284 - +2.6 958,307 - +0.5 958,317 + -1.6 958,318 - +4.0 958,321 + -0.4 958,349 + -0.0 958,426 + HMPREF1058_RS20480 0.21 +0.3 958,427 - HMPREF1058_RS20480 0.21 -0.1 958,427 - HMPREF1058_RS20480 0.21 +1.0 958,429 - HMPREF1058_RS20480 0.22 +0.2 958,434 + HMPREF1058_RS20480 0.23 -1.4 958,435 - HMPREF1058_RS20480 0.24 +0.4 958,469 - HMPREF1058_RS20480 0.33 +0.8 958,585 + HMPREF1058_RS20480 0.65 -1.6 958,586 + HMPREF1058_RS20480 0.65 -0.8 958,587 - HMPREF1058_RS20480 0.66 +0.7 958,587 - HMPREF1058_RS20480 0.66 +0.1 958,587 - HMPREF1058_RS20480 0.66 -0.1 958,607 - HMPREF1058_RS20480 0.71 -0.6 958,627 - HMPREF1058_RS20480 0.77 +0.7 958,726 + +0.1 958,727 - -1.3 958,728 + +0.0 958,728 + +0.1 958,729 - -0.6 958,729 - +1.0 958,783 + -0.0 958,873 - HMPREF1058_RS20485 0.10 -2.0 958,950 + HMPREF1058_RS20485 0.47 -2.1 958,951 - HMPREF1058_RS20485 0.47 -0.4 959,158 - -0.7 959,172 - -1.6 959,172 - -0.6 959,175 + +0.7 959,176 - +0.3 959,241 - -1.5 959,241 - -1.1 959,298 + -0.7 959,414 + HMPREF1058_RS15290 0.12 -0.0 959,446 + HMPREF1058_RS15290 0.15 +0.8 959,446 + HMPREF1058_RS15290 0.15 +0.2 959,446 + HMPREF1058_RS15290 0.15 +0.4 959,449 - HMPREF1058_RS15290 0.15 -0.3 959,503 + HMPREF1058_RS15290 0.19 -2.6 959,507 + HMPREF1058_RS15290 0.20 -0.4 959,508 - HMPREF1058_RS15290 0.20 -1.5 959,508 - HMPREF1058_RS15290 0.20 +1.8 959,594 + HMPREF1058_RS15290 0.27 -0.6 959,642 - HMPREF1058_RS15290 0.31 -0.8 959,642 - HMPREF1058_RS15290 0.31 -0.4 959,642 - HMPREF1058_RS15290 0.31 -1.0 959,642 - HMPREF1058_RS15290 0.31 -0.5 959,674 + HMPREF1058_RS15290 0.34 -0.2 959,817 + HMPREF1058_RS15290 0.45 -0.2 959,830 + HMPREF1058_RS15290 0.46 -1.9 959,862 - HMPREF1058_RS15290 0.49 -0.7 959,865 - HMPREF1058_RS15290 0.49 +0.1 959,872 + HMPREF1058_RS15290 0.50 -0.4 960,038 + HMPREF1058_RS15290 0.64 +0.5 960,056 - HMPREF1058_RS15290 0.65 -0.1
Or see this region's nucleotide sequence