Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20320 and HMPREF1058_RS19160 are separated by 270 nucleotides HMPREF1058_RS19160 and HMPREF1058_RS19155 are separated by 81 nucleotides HMPREF1058_RS19155 and HMPREF1058_RS21305 are separated by 60 nucleotides HMPREF1058_RS21305 and HMPREF1058_RS19150 are separated by 21 nucleotides
HMPREF1058_RS20320: HMPREF1058_RS20320 - hypothetical protein, at 11,085 to 13,751
_RS20320
HMPREF1058_RS19160: HMPREF1058_RS19160 - hypothetical protein, at 14,022 to 14,381
_RS19160
HMPREF1058_RS19155: HMPREF1058_RS19155 - DUF2829 domain-containing protein, at 14,463 to 14,921
_RS19155
HMPREF1058_RS21305: HMPREF1058_RS21305 - hypothetical protein, at 14,982 to 15,545
_RS21305
HMPREF1058_RS19150: HMPREF1058_RS19150 - phage portal protein, at 15,567 to 16,973
_RS19150
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.497 kb on - strand at 13.504 kb on + strand at 13.684 kb on + strand at 13.684 kb on + strand at 13.751 kb on + strand at 13.754 kb on + strand at 13.804 kb on + strand at 13.805 kb on - strand at 13.989 kb on - strand at 14.096 kb on + strand, within HMPREF1058_RS19160 at 14.096 kb on + strand, within HMPREF1058_RS19160 at 14.111 kb on + strand, within HMPREF1058_RS19160 at 14.149 kb on - strand, within HMPREF1058_RS19160 at 14.153 kb on + strand, within HMPREF1058_RS19160 at 14.153 kb on + strand, within HMPREF1058_RS19160 at 14.164 kb on - strand, within HMPREF1058_RS19160 at 14.205 kb on - strand, within HMPREF1058_RS19160 at 14.261 kb on + strand, within HMPREF1058_RS19160 at 14.324 kb on + strand, within HMPREF1058_RS19160 at 14.363 kb on + strand at 14.363 kb on + strand at 14.363 kb on + strand at 14.392 kb on + strand at 14.396 kb on + strand at 14.459 kb on + strand at 14.549 kb on + strand, within HMPREF1058_RS19155 at 14.549 kb on + strand, within HMPREF1058_RS19155 at 14.594 kb on + strand, within HMPREF1058_RS19155 at 14.649 kb on + strand, within HMPREF1058_RS19155 at 14.649 kb on + strand, within HMPREF1058_RS19155 at 14.737 kb on - strand, within HMPREF1058_RS19155 at 14.738 kb on + strand, within HMPREF1058_RS19155 at 14.856 kb on - strand, within HMPREF1058_RS19155 at 14.921 kb on + strand at 14.921 kb on + strand at 14.979 kb on + strand at 14.996 kb on + strand at 14.998 kb on + strand at 14.999 kb on - strand at 14.999 kb on - strand at 15.078 kb on + strand, within HMPREF1058_RS21305 at 15.215 kb on + strand, within HMPREF1058_RS21305 at 15.285 kb on + strand, within HMPREF1058_RS21305 at 15.532 kb on - strand at 15.545 kb on + strand at 15.568 kb on + strand at 15.664 kb on + strand at 15.664 kb on + strand at 15.725 kb on + strand, within HMPREF1058_RS19150 at 15.789 kb on + strand, within HMPREF1058_RS19150 at 15.789 kb on + strand, within HMPREF1058_RS19150 at 15.851 kb on + strand, within HMPREF1058_RS19150 at 15.851 kb on + strand, within HMPREF1058_RS19150 at 15.874 kb on - strand, within HMPREF1058_RS19150
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 13,497 - -0.7 13,504 + +0.0 13,684 + -0.7 13,684 + -0.5 13,751 + -0.3 13,754 + +0.1 13,804 + -0.9 13,805 - +0.4 13,989 - -0.4 14,096 + HMPREF1058_RS19160 0.21 -0.4 14,096 + HMPREF1058_RS19160 0.21 +0.6 14,111 + HMPREF1058_RS19160 0.25 -0.4 14,149 - HMPREF1058_RS19160 0.35 +0.6 14,153 + HMPREF1058_RS19160 0.36 +0.8 14,153 + HMPREF1058_RS19160 0.36 -1.4 14,164 - HMPREF1058_RS19160 0.39 +0.6 14,205 - HMPREF1058_RS19160 0.51 -0.8 14,261 + HMPREF1058_RS19160 0.66 +1.0 14,324 + HMPREF1058_RS19160 0.84 +0.2 14,363 + +1.4 14,363 + +0.3 14,363 + +0.8 14,392 + -0.6 14,396 + -0.5 14,459 + +0.9 14,549 + HMPREF1058_RS19155 0.19 -1.2 14,549 + HMPREF1058_RS19155 0.19 -0.4 14,594 + HMPREF1058_RS19155 0.29 -0.6 14,649 + HMPREF1058_RS19155 0.41 -0.6 14,649 + HMPREF1058_RS19155 0.41 -1.6 14,737 - HMPREF1058_RS19155 0.60 -0.7 14,738 + HMPREF1058_RS19155 0.60 +1.5 14,856 - HMPREF1058_RS19155 0.86 -0.7 14,921 + +0.1 14,921 + +0.8 14,979 + +1.1 14,996 + -0.2 14,998 + -0.9 14,999 - +1.0 14,999 - -0.5 15,078 + HMPREF1058_RS21305 0.17 -0.9 15,215 + HMPREF1058_RS21305 0.41 -0.5 15,285 + HMPREF1058_RS21305 0.54 -1.6 15,532 - -2.2 15,545 + +0.8 15,568 + -0.1 15,664 + +0.7 15,664 + +3.1 15,725 + HMPREF1058_RS19150 0.11 -0.4 15,789 + HMPREF1058_RS19150 0.16 +0.0 15,789 + HMPREF1058_RS19150 0.16 -0.7 15,851 + HMPREF1058_RS19150 0.20 +0.1 15,851 + HMPREF1058_RS19150 0.20 -2.4 15,874 - HMPREF1058_RS19150 0.22 -0.5
Or see this region's nucleotide sequence