Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18635

Experiment: FSL 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	FSL 10 mg/mL (C)
109,484	+				+0.4
109,484	+				+1.1
109,485	-				-1.7
109,488	+				+0.6
109,508	+				+0.7
109,509	-				+1.4
109,528	-				-0.4
109,530	+				+0.6
109,531	-				-0.9
109,531	-				-0.2
109,636	+		HMPREF1058_RS18640	0.20	+0.2
109,640	+		HMPREF1058_RS18640	0.21	-0.0
109,641	-		HMPREF1058_RS18640	0.21	+0.1
109,641	-		HMPREF1058_RS18640	0.21	-0.0
109,685	+		HMPREF1058_RS18640	0.26	-0.8
109,686	-		HMPREF1058_RS18640	0.26	-0.3
109,690	-		HMPREF1058_RS18640	0.27	+0.8
109,733	-		HMPREF1058_RS18640	0.32	-1.1
109,783	+				+0.3
109,803	-		HMPREF1058_RS18640	0.41	+0.7
109,844	+		HMPREF1058_RS18640	0.46	+0.2
109,844	+		HMPREF1058_RS18640	0.46	-0.6
109,845	-		HMPREF1058_RS18640	0.46	+2.1
109,845	-		HMPREF1058_RS18640	0.46	-0.4
109,922	-		HMPREF1058_RS18640	0.56	-0.6
109,969	-		HMPREF1058_RS18640	0.62	-0.8
109,976	-		HMPREF1058_RS18640	0.63	+0.8
109,976	-		HMPREF1058_RS18640	0.63	+0.5
110,030	-		HMPREF1058_RS18640	0.69	+0.5
110,088	-		HMPREF1058_RS18640	0.76	+2.2
110,111	+		HMPREF1058_RS18640	0.79	-0.9
110,112	-		HMPREF1058_RS18640	0.79	-0.5
110,140	-		HMPREF1058_RS18640	0.83	-0.4
110,140	-		HMPREF1058_RS18640	0.83	-0.9
110,210	+				+0.6
110,211	-				+0.5
110,253	-				-0.7
110,261	-				+1.3
110,261	-				-0.0
110,276	+				-1.1
110,277	-				+0.3
110,277	-				-0.2
110,312	-				-1.4
110,420	+				-0.8
110,425	-				-0.6
110,425	-				-0.8
110,425	-				-1.1
110,425	-				+0.3
110,586	+				-0.1
110,693	-		HMPREF1058_RS18635	0.55	-1.3
110,855	-				-0.5
110,873	+				-0.5
110,873	+				+0.8
110,877	-				+0.3
110,879	+				+0.5
110,880	-				-0.2
110,917	-				-1.2
110,917	-				-0.7
111,015	+				+0.8
111,022	+				+0.4
111,043	+				-0.3
111,044	-				+1.0
111,052	-				+0.0
111,077	-				-0.7
111,085	+				+0.3
111,085	+				+0.3
111,188	-		HMPREF1058_RS18630	0.15	+0.0
111,215	-		HMPREF1058_RS18630	0.17	-0.6
111,244	+		HMPREF1058_RS18630	0.20	-0.5
111,278	-		HMPREF1058_RS18630	0.22	+0.5
111,311	-		HMPREF1058_RS18630	0.25	-0.4
111,338	-		HMPREF1058_RS18630	0.27	+0.2
111,344	+		HMPREF1058_RS18630	0.27	-0.2
111,364	-		HMPREF1058_RS18630	0.29	-0.4
111,487	+		HMPREF1058_RS18630	0.38	+1.2
111,488	-		HMPREF1058_RS18630	0.38	+0.2
111,583	+		HMPREF1058_RS18630	0.46	+0.5
111,584	-		HMPREF1058_RS18630	0.46	-0.7
111,584	-		HMPREF1058_RS18630	0.46	-0.8
111,713	-		HMPREF1058_RS18630	0.56	-1.7
111,735	-		HMPREF1058_RS18630	0.58	-1.9
111,735	-		HMPREF1058_RS18630	0.58	+1.8
111,778	-		HMPREF1058_RS18630	0.61	+0.6
111,837	-		HMPREF1058_RS18630	0.66	+0.8