Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18400

Experiment: FSL 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	FSL 10 mg/mL (C)
164,309	-		HMPREF1058_RS18405	0.32	-0.0
164,355	+		HMPREF1058_RS18405	0.35	-0.3
164,356	-		HMPREF1058_RS18405	0.36	-0.4
164,398	-		HMPREF1058_RS18405	0.39	-0.0
164,475	+		HMPREF1058_RS18405	0.46	-1.8
164,475	+		HMPREF1058_RS18405	0.46	-0.3
164,475	+		HMPREF1058_RS18405	0.46	+1.5
164,565	-		HMPREF1058_RS18405	0.53	-0.1
164,616	-		HMPREF1058_RS18405	0.57	-0.7
164,637	+				+2.7
164,728	-		HMPREF1058_RS18405	0.67	+0.3
164,748	-		HMPREF1058_RS18405	0.68	+0.3
164,755	+		HMPREF1058_RS18405	0.69	+0.5
164,757	+		HMPREF1058_RS18405	0.69	-0.5
164,758	-		HMPREF1058_RS18405	0.69	+1.0
164,848	+		HMPREF1058_RS18405	0.77	-1.7
164,849	-		HMPREF1058_RS18405	0.77	+0.6
164,919	-		HMPREF1058_RS18405	0.83	+1.0
165,049	-				-0.1
165,075	+				+0.0
165,083	-				+1.0
165,089	-				-0.3
165,137	-				-0.0
165,246	+				-1.1
165,347	-		HMPREF1058_RS18400	0.16	-1.0
165,421	-		HMPREF1058_RS18400	0.36	-0.9
165,450	+		HMPREF1058_RS18400	0.43	-1.3
165,453	+		HMPREF1058_RS18400	0.44	+0.7
165,584	-		HMPREF1058_RS18400	0.79	-1.5
165,588	+		HMPREF1058_RS18400	0.80	-1.5
165,625	-		HMPREF1058_RS18400	0.90	-0.9
165,713	-				-0.2
165,907	+				+0.1
166,009	+				+0.2
166,009	+				-1.6
166,024	+				+0.7
166,076	+				+0.2