Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17950

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17955 and HMPREF1058_RS17950 are separated by 38 nucleotidesHMPREF1058_RS17950 and HMPREF1058_RS17945 are separated by 12 nucleotidesHMPREF1058_RS17945 and HMPREF1058_RS17940 are separated by 152 nucleotides HMPREF1058_RS17955: HMPREF1058_RS17955 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 292,079 to 293,350 _RS17955 HMPREF1058_RS17950: HMPREF1058_RS17950 - biotin synthase BioB, at 293,389 to 294,348 _RS17950 HMPREF1058_RS17945: HMPREF1058_RS17945 - hypothetical protein, at 294,361 to 294,726 _RS17945 HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291 _RS17940 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 292.435 kb on + strand, within HMPREF1058_RS17955at 292.521 kb on + strand, within HMPREF1058_RS17955at 292.540 kb on + strand, within HMPREF1058_RS17955at 292.544 kb on + strand, within HMPREF1058_RS17955at 292.668 kb on - strand, within HMPREF1058_RS17955at 292.718 kb on + strand, within HMPREF1058_RS17955at 292.724 kb on - strand, within HMPREF1058_RS17955at 292.787 kb on + strand, within HMPREF1058_RS17955at 292.787 kb on + strand, within HMPREF1058_RS17955at 292.787 kb on + strand, within HMPREF1058_RS17955at 292.787 kb on + strand, within HMPREF1058_RS17955at 292.788 kb on - strand, within HMPREF1058_RS17955at 292.943 kb on - strand, within HMPREF1058_RS17955at 292.986 kb on + strand, within HMPREF1058_RS17955at 293.195 kb on + strand, within HMPREF1058_RS17955at 293.195 kb on + strand, within HMPREF1058_RS17955at 293.195 kb on + strand, within HMPREF1058_RS17955at 293.196 kb on - strand, within HMPREF1058_RS17955at 293.225 kb on + strandat 293.225 kb on + strandat 293.252 kb on + strandat 293.252 kb on + strandat 293.252 kb on + strandat 293.255 kb on - strandat 293.256 kb on + strandat 293.257 kb on - strandat 293.257 kb on - strandat 293.283 kb on + strandat 293.284 kb on - strandat 293.311 kb on + strandat 293.311 kb on + strandat 293.351 kb on - strandat 293.370 kb on - strandat 293.375 kb on - strandat 293.414 kb on - strandat 293.447 kb on - strandat 293.447 kb on - strandat 293.481 kb on + strandat 293.492 kb on + strand, within HMPREF1058_RS17950at 293.492 kb on + strand, within HMPREF1058_RS17950at 293.493 kb on - strand, within HMPREF1058_RS17950at 293.493 kb on - strand, within HMPREF1058_RS17950at 293.493 kb on - strand, within HMPREF1058_RS17950at 293.646 kb on + strand, within HMPREF1058_RS17950at 293.665 kb on - strand, within HMPREF1058_RS17950at 293.678 kb on - strand, within HMPREF1058_RS17950at 293.698 kb on - strand, within HMPREF1058_RS17950at 293.758 kb on + strand, within HMPREF1058_RS17950at 293.820 kb on + strand, within HMPREF1058_RS17950at 293.820 kb on + strand, within HMPREF1058_RS17950at 293.821 kb on - strand, within HMPREF1058_RS17950at 293.828 kb on - strand, within HMPREF1058_RS17950at 293.863 kb on - strand, within HMPREF1058_RS17950at 293.863 kb on - strand, within HMPREF1058_RS17950at 293.966 kb on + strand, within HMPREF1058_RS17950at 294.104 kb on + strand, within HMPREF1058_RS17950at 294.248 kb on + strand, within HMPREF1058_RS17950at 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.351 kb on - strandat 294.518 kb on + strand, within HMPREF1058_RS17945at 294.519 kb on - strand, within HMPREF1058_RS17945at 294.630 kb on + strand, within HMPREF1058_RS17945at 294.631 kb on - strand, within HMPREF1058_RS17945at 294.634 kb on + strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.651 kb on + strand, within HMPREF1058_RS17945at 294.652 kb on - strand, within HMPREF1058_RS17945at 294.660 kb on + strand, within HMPREF1058_RS17945at 294.661 kb on - strand, within HMPREF1058_RS17945at 294.666 kb on - strand, within HMPREF1058_RS17945at 294.694 kb on + strandat 294.699 kb on + strandat 294.700 kb on - strandat 294.700 kb on - strandat 294.785 kb on - strandat 294.789 kb on - strandat 294.819 kb on + strandat 294.865 kb on - strandat 294.865 kb on - strandat 294.867 kb on - strandat 294.867 kb on - strandat 294.872 kb on - strandat 295.110 kb on - strand, within HMPREF1058_RS17940at 295.142 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.196 kb on - strand, within HMPREF1058_RS17940at 295.253 kb on + strand, within HMPREF1058_RS17940at 295.327 kb on + strand, within HMPREF1058_RS17940

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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292,435 + HMPREF1058_RS17955 0.28 +0.2
292,521 + HMPREF1058_RS17955 0.35 -2.0
292,540 + HMPREF1058_RS17955 0.36 +0.6
292,544 + HMPREF1058_RS17955 0.37 -1.6
292,668 - HMPREF1058_RS17955 0.46 -1.4
292,718 + HMPREF1058_RS17955 0.50 -0.9
292,724 - HMPREF1058_RS17955 0.51 +0.3
292,787 + HMPREF1058_RS17955 0.56 -1.3
292,787 + HMPREF1058_RS17955 0.56 +0.4
292,787 + HMPREF1058_RS17955 0.56 -0.3
292,787 + HMPREF1058_RS17955 0.56 -2.8
292,788 - HMPREF1058_RS17955 0.56 +0.4
292,943 - HMPREF1058_RS17955 0.68 +1.3
292,986 + HMPREF1058_RS17955 0.71 -1.4
293,195 + HMPREF1058_RS17955 0.88 +1.2
293,195 + HMPREF1058_RS17955 0.88 -0.5
293,195 + HMPREF1058_RS17955 0.88 -0.3
293,196 - HMPREF1058_RS17955 0.88 +0.5
293,225 + -0.6
293,225 + +1.1
293,252 + -1.4
293,252 + +0.7
293,252 + -0.8
293,255 - -0.6
293,256 + -2.1
293,257 - -1.4
293,257 - -1.5
293,283 + -1.8
293,284 - -1.6
293,311 + -3.7
293,311 + +0.2
293,351 - -0.5
293,370 - -0.1
293,375 - +1.8
293,414 - +0.3
293,447 - +0.6
293,447 - -0.5
293,481 + -1.9
293,492 + HMPREF1058_RS17950 0.11 +1.3
293,492 + HMPREF1058_RS17950 0.11 -1.4
293,493 - HMPREF1058_RS17950 0.11 +0.5
293,493 - HMPREF1058_RS17950 0.11 -1.1
293,493 - HMPREF1058_RS17950 0.11 -2.4
293,646 + HMPREF1058_RS17950 0.27 -1.3
293,665 - HMPREF1058_RS17950 0.29 +1.5
293,678 - HMPREF1058_RS17950 0.30 +3.1
293,698 - HMPREF1058_RS17950 0.32 +1.3
293,758 + HMPREF1058_RS17950 0.38 +0.9
293,820 + HMPREF1058_RS17950 0.45 -1.3
293,820 + HMPREF1058_RS17950 0.45 -0.9
293,821 - HMPREF1058_RS17950 0.45 -2.6
293,828 - HMPREF1058_RS17950 0.46 +0.2
293,863 - HMPREF1058_RS17950 0.49 -1.5
293,863 - HMPREF1058_RS17950 0.49 -0.6
293,966 + HMPREF1058_RS17950 0.60 +0.2
294,104 + HMPREF1058_RS17950 0.74 -0.8
294,248 + HMPREF1058_RS17950 0.89 -1.5
294,350 + +0.1
294,350 + -1.9
294,350 + +2.1
294,350 + +1.5
294,351 - +0.8
294,518 + HMPREF1058_RS17945 0.43 -0.5
294,519 - HMPREF1058_RS17945 0.43 -1.7
294,630 + HMPREF1058_RS17945 0.73 -2.2
294,631 - HMPREF1058_RS17945 0.74 -0.8
294,634 + HMPREF1058_RS17945 0.75 -2.2
294,635 - HMPREF1058_RS17945 0.75 -2.4
294,635 - HMPREF1058_RS17945 0.75 -1.9
294,635 - HMPREF1058_RS17945 0.75 -0.9
294,651 + HMPREF1058_RS17945 0.79 +0.1
294,652 - HMPREF1058_RS17945 0.80 -0.3
294,660 + HMPREF1058_RS17945 0.82 -1.7
294,661 - HMPREF1058_RS17945 0.82 -0.9
294,666 - HMPREF1058_RS17945 0.83 -0.4
294,694 + -0.5
294,699 + -2.5
294,700 - -1.5
294,700 - -0.0
294,785 - +0.6
294,789 - -0.3
294,819 + -0.2
294,865 - +0.7
294,865 - +0.5
294,867 - +0.1
294,867 - +0.4
294,872 - -0.1
295,110 - HMPREF1058_RS17940 0.16 +1.9
295,142 + HMPREF1058_RS17940 0.19 +0.3
295,165 + HMPREF1058_RS17940 0.20 +2.6
295,165 + HMPREF1058_RS17940 0.20 +2.2
295,166 - HMPREF1058_RS17940 0.20 +1.4
295,166 - HMPREF1058_RS17940 0.20 +2.3
295,166 - HMPREF1058_RS17940 0.20 +1.7
295,196 - HMPREF1058_RS17940 0.22 +1.1
295,253 + HMPREF1058_RS17940 0.26 +0.6
295,327 + HMPREF1058_RS17940 0.32 +1.7

Or see this region's nucleotide sequence