Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17950 and HMPREF1058_RS17945 are separated by 12 nucleotides HMPREF1058_RS17945 and HMPREF1058_RS17940 are separated by 152 nucleotides
HMPREF1058_RS17950: HMPREF1058_RS17950 - biotin synthase BioB, at 293,389 to 294,348
_RS17950
HMPREF1058_RS17945: HMPREF1058_RS17945 - hypothetical protein, at 294,361 to 294,726
_RS17945
HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291
_RS17940
Position (kb) 294
295 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 293.370 kb on - strand at 293.375 kb on - strand at 293.414 kb on - strand at 293.447 kb on - strand at 293.447 kb on - strand at 293.481 kb on + strand at 293.492 kb on + strand, within HMPREF1058_RS17950 at 293.492 kb on + strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.646 kb on + strand, within HMPREF1058_RS17950 at 293.665 kb on - strand, within HMPREF1058_RS17950 at 293.678 kb on - strand, within HMPREF1058_RS17950 at 293.698 kb on - strand, within HMPREF1058_RS17950 at 293.758 kb on + strand, within HMPREF1058_RS17950 at 293.820 kb on + strand, within HMPREF1058_RS17950 at 293.820 kb on + strand, within HMPREF1058_RS17950 at 293.821 kb on - strand, within HMPREF1058_RS17950 at 293.828 kb on - strand, within HMPREF1058_RS17950 at 293.863 kb on - strand, within HMPREF1058_RS17950 at 293.863 kb on - strand, within HMPREF1058_RS17950 at 293.966 kb on + strand, within HMPREF1058_RS17950 at 294.104 kb on + strand, within HMPREF1058_RS17950 at 294.248 kb on + strand, within HMPREF1058_RS17950 at 294.350 kb on + strand at 294.350 kb on + strand at 294.350 kb on + strand at 294.350 kb on + strand at 294.351 kb on - strand at 294.518 kb on + strand, within HMPREF1058_RS17945 at 294.519 kb on - strand, within HMPREF1058_RS17945 at 294.630 kb on + strand, within HMPREF1058_RS17945 at 294.631 kb on - strand, within HMPREF1058_RS17945 at 294.634 kb on + strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.651 kb on + strand, within HMPREF1058_RS17945 at 294.652 kb on - strand, within HMPREF1058_RS17945 at 294.660 kb on + strand, within HMPREF1058_RS17945 at 294.661 kb on - strand, within HMPREF1058_RS17945 at 294.666 kb on - strand, within HMPREF1058_RS17945 at 294.694 kb on + strand at 294.699 kb on + strand at 294.700 kb on - strand at 294.700 kb on - strand at 294.785 kb on - strand at 294.789 kb on - strand at 294.819 kb on + strand at 294.865 kb on - strand at 294.865 kb on - strand at 294.867 kb on - strand at 294.867 kb on - strand at 294.872 kb on - strand at 295.110 kb on - strand, within HMPREF1058_RS17940 at 295.142 kb on + strand, within HMPREF1058_RS17940 at 295.165 kb on + strand, within HMPREF1058_RS17940 at 295.165 kb on + strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.196 kb on - strand, within HMPREF1058_RS17940 at 295.253 kb on + strand, within HMPREF1058_RS17940 at 295.327 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.475 kb on + strand, within HMPREF1058_RS17940 at 295.620 kb on + strand, within HMPREF1058_RS17940 at 295.623 kb on - strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.664 kb on + strand, within HMPREF1058_RS17940
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 293,370 - -0.1 293,375 - +1.8 293,414 - +0.3 293,447 - +0.6 293,447 - -0.5 293,481 + -1.9 293,492 + HMPREF1058_RS17950 0.11 +1.3 293,492 + HMPREF1058_RS17950 0.11 -1.4 293,493 - HMPREF1058_RS17950 0.11 +0.5 293,493 - HMPREF1058_RS17950 0.11 -1.1 293,493 - HMPREF1058_RS17950 0.11 -2.4 293,646 + HMPREF1058_RS17950 0.27 -1.3 293,665 - HMPREF1058_RS17950 0.29 +1.5 293,678 - HMPREF1058_RS17950 0.30 +3.1 293,698 - HMPREF1058_RS17950 0.32 +1.3 293,758 + HMPREF1058_RS17950 0.38 +0.9 293,820 + HMPREF1058_RS17950 0.45 -1.3 293,820 + HMPREF1058_RS17950 0.45 -0.9 293,821 - HMPREF1058_RS17950 0.45 -2.6 293,828 - HMPREF1058_RS17950 0.46 +0.2 293,863 - HMPREF1058_RS17950 0.49 -1.5 293,863 - HMPREF1058_RS17950 0.49 -0.6 293,966 + HMPREF1058_RS17950 0.60 +0.2 294,104 + HMPREF1058_RS17950 0.74 -0.8 294,248 + HMPREF1058_RS17950 0.89 -1.5 294,350 + +0.1 294,350 + -1.9 294,350 + +2.1 294,350 + +1.5 294,351 - +0.8 294,518 + HMPREF1058_RS17945 0.43 -0.5 294,519 - HMPREF1058_RS17945 0.43 -1.7 294,630 + HMPREF1058_RS17945 0.73 -2.2 294,631 - HMPREF1058_RS17945 0.74 -0.8 294,634 + HMPREF1058_RS17945 0.75 -2.2 294,635 - HMPREF1058_RS17945 0.75 -2.4 294,635 - HMPREF1058_RS17945 0.75 -1.9 294,635 - HMPREF1058_RS17945 0.75 -0.9 294,651 + HMPREF1058_RS17945 0.79 +0.1 294,652 - HMPREF1058_RS17945 0.80 -0.3 294,660 + HMPREF1058_RS17945 0.82 -1.7 294,661 - HMPREF1058_RS17945 0.82 -0.9 294,666 - HMPREF1058_RS17945 0.83 -0.4 294,694 + -0.5 294,699 + -2.5 294,700 - -1.5 294,700 - -0.0 294,785 - +0.6 294,789 - -0.3 294,819 + -0.2 294,865 - +0.7 294,865 - +0.5 294,867 - +0.1 294,867 - +0.4 294,872 - -0.1 295,110 - HMPREF1058_RS17940 0.16 +1.9 295,142 + HMPREF1058_RS17940 0.19 +0.3 295,165 + HMPREF1058_RS17940 0.20 +2.6 295,165 + HMPREF1058_RS17940 0.20 +2.2 295,166 - HMPREF1058_RS17940 0.20 +1.4 295,166 - HMPREF1058_RS17940 0.20 +2.3 295,166 - HMPREF1058_RS17940 0.20 +1.7 295,196 - HMPREF1058_RS17940 0.22 +1.1 295,253 + HMPREF1058_RS17940 0.26 +0.6 295,327 + HMPREF1058_RS17940 0.32 +1.7 295,406 + HMPREF1058_RS17940 0.37 +2.1 295,406 + HMPREF1058_RS17940 0.37 +0.8 295,475 + HMPREF1058_RS17940 0.42 +2.5 295,620 + HMPREF1058_RS17940 0.52 +0.4 295,623 - HMPREF1058_RS17940 0.53 -0.4 295,624 + HMPREF1058_RS17940 0.53 +1.7 295,624 + HMPREF1058_RS17940 0.53 +2.2 295,664 + HMPREF1058_RS17940 0.56 +1.6
Or see this region's nucleotide sequence