Experiment: FSL 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17505 and HMPREF1058_RS17500 are separated by 147 nucleotides HMPREF1058_RS17500 and HMPREF1058_RS17495 are separated by 84 nucleotides
HMPREF1058_RS17505: HMPREF1058_RS17505 - discoidin domain-containing protein, at 412,180 to 415,410
_RS17505
HMPREF1058_RS17500: HMPREF1058_RS17500 - beta-glycosidase, at 415,558 to 418,398
_RS17500
HMPREF1058_RS17495: HMPREF1058_RS17495 - DUF4981 domain-containing protein, at 418,483 to 421,674
_RS17495
Position (kb) 415
416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 414.687 kb on + strand, within HMPREF1058_RS17505 at 414.904 kb on - strand, within HMPREF1058_RS17505 at 414.918 kb on - strand, within HMPREF1058_RS17505 at 414.979 kb on + strand, within HMPREF1058_RS17505 at 414.982 kb on - strand, within HMPREF1058_RS17505 at 414.982 kb on - strand, within HMPREF1058_RS17505 at 414.982 kb on - strand, within HMPREF1058_RS17505 at 414.982 kb on - strand, within HMPREF1058_RS17505 at 415.063 kb on - strand, within HMPREF1058_RS17505 at 415.104 kb on + strand at 415.104 kb on + strand at 415.107 kb on + strand at 415.107 kb on + strand at 415.119 kb on + strand at 415.217 kb on - strand at 415.388 kb on - strand at 415.411 kb on - strand at 415.420 kb on - strand at 415.436 kb on + strand at 415.475 kb on + strand at 415.476 kb on - strand at 415.590 kb on - strand at 415.628 kb on - strand at 415.653 kb on + strand at 415.706 kb on + strand at 415.748 kb on - strand at 415.751 kb on + strand at 415.752 kb on - strand at 415.765 kb on - strand at 415.777 kb on - strand at 415.777 kb on - strand at 415.780 kb on + strand at 415.780 kb on + strand at 415.781 kb on - strand at 415.830 kb on - strand at 415.878 kb on + strand, within HMPREF1058_RS17500 at 415.878 kb on + strand, within HMPREF1058_RS17500 at 415.880 kb on + strand, within HMPREF1058_RS17500 at 415.881 kb on - strand, within HMPREF1058_RS17500 at 415.881 kb on - strand, within HMPREF1058_RS17500 at 416.031 kb on - strand, within HMPREF1058_RS17500 at 416.074 kb on + strand, within HMPREF1058_RS17500 at 416.102 kb on + strand, within HMPREF1058_RS17500 at 416.226 kb on - strand, within HMPREF1058_RS17500 at 416.396 kb on + strand, within HMPREF1058_RS17500 at 416.463 kb on + strand, within HMPREF1058_RS17500 at 416.644 kb on - strand, within HMPREF1058_RS17500 at 416.661 kb on + strand, within HMPREF1058_RS17500 at 416.661 kb on + strand, within HMPREF1058_RS17500 at 416.661 kb on + strand, within HMPREF1058_RS17500 at 416.662 kb on - strand, within HMPREF1058_RS17500 at 416.662 kb on - strand, within HMPREF1058_RS17500 at 416.774 kb on + strand, within HMPREF1058_RS17500 at 416.775 kb on - strand, within HMPREF1058_RS17500 at 416.943 kb on - strand, within HMPREF1058_RS17500 at 416.968 kb on + strand, within HMPREF1058_RS17500 at 416.998 kb on - strand, within HMPREF1058_RS17500 at 417.020 kb on + strand, within HMPREF1058_RS17500 at 417.020 kb on + strand, within HMPREF1058_RS17500 at 417.114 kb on - strand, within HMPREF1058_RS17500 at 417.181 kb on - strand, within HMPREF1058_RS17500 at 417.193 kb on + strand, within HMPREF1058_RS17500 at 417.281 kb on + strand, within HMPREF1058_RS17500 at 417.376 kb on + strand, within HMPREF1058_RS17500 at 417.377 kb on - strand, within HMPREF1058_RS17500 at 417.408 kb on + strand, within HMPREF1058_RS17500 at 417.477 kb on - strand, within HMPREF1058_RS17500 at 417.555 kb on + strand, within HMPREF1058_RS17500 at 417.581 kb on + strand, within HMPREF1058_RS17500 at 417.715 kb on - strand, within HMPREF1058_RS17500 at 417.719 kb on - strand, within HMPREF1058_RS17500 at 417.719 kb on - strand, within HMPREF1058_RS17500 at 417.787 kb on + strand, within HMPREF1058_RS17500 at 417.976 kb on - strand, within HMPREF1058_RS17500 at 417.981 kb on + strand, within HMPREF1058_RS17500 at 418.030 kb on + strand, within HMPREF1058_RS17500 at 418.120 kb on - strand at 418.120 kb on - strand at 418.142 kb on - strand at 418.187 kb on + strand at 418.188 kb on - strand at 418.188 kb on - strand at 418.204 kb on + strand at 418.282 kb on + strand at 418.282 kb on + strand at 418.283 kb on - strand at 418.283 kb on - strand at 418.283 kb on - strand at 418.375 kb on + strand at 418.420 kb on + strand at 418.462 kb on - strand at 418.659 kb on + strand at 418.660 kb on - strand at 418.660 kb on - strand at 418.672 kb on - strand at 418.673 kb on + strand at 418.706 kb on - strand at 418.738 kb on - strand at 418.806 kb on - strand, within HMPREF1058_RS17495 at 418.833 kb on + strand, within HMPREF1058_RS17495 at 418.837 kb on + strand, within HMPREF1058_RS17495 at 418.838 kb on - strand, within HMPREF1058_RS17495 at 418.921 kb on + strand, within HMPREF1058_RS17495 at 418.973 kb on + strand, within HMPREF1058_RS17495 at 418.974 kb on - strand, within HMPREF1058_RS17495 at 418.974 kb on - strand, within HMPREF1058_RS17495 at 419.006 kb on + strand, within HMPREF1058_RS17495 at 419.006 kb on + strand, within HMPREF1058_RS17495 at 419.013 kb on + strand, within HMPREF1058_RS17495 at 419.014 kb on - strand, within HMPREF1058_RS17495 at 419.014 kb on - strand, within HMPREF1058_RS17495 at 419.116 kb on - strand, within HMPREF1058_RS17495 at 419.116 kb on - strand, within HMPREF1058_RS17495 at 419.119 kb on + strand, within HMPREF1058_RS17495 at 419.125 kb on + strand, within HMPREF1058_RS17495 at 419.188 kb on - strand, within HMPREF1058_RS17495 at 419.222 kb on + strand, within HMPREF1058_RS17495 at 419.278 kb on + strand, within HMPREF1058_RS17495 at 419.279 kb on - strand, within HMPREF1058_RS17495 at 419.375 kb on - strand, within HMPREF1058_RS17495 at 419.378 kb on - strand, within HMPREF1058_RS17495 at 419.379 kb on + strand, within HMPREF1058_RS17495 at 419.379 kb on + strand, within HMPREF1058_RS17495 at 419.379 kb on + strand, within HMPREF1058_RS17495 at 419.380 kb on - strand, within HMPREF1058_RS17495 at 419.380 kb on - strand, within HMPREF1058_RS17495
Per-strain Table
Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C) remove 414,687 + HMPREF1058_RS17505 0.78 -0.7 414,904 - HMPREF1058_RS17505 0.84 -0.2 414,918 - HMPREF1058_RS17505 0.85 -1.2 414,979 + HMPREF1058_RS17505 0.87 +2.1 414,982 - HMPREF1058_RS17505 0.87 +0.2 414,982 - HMPREF1058_RS17505 0.87 -0.7 414,982 - HMPREF1058_RS17505 0.87 +1.1 414,982 - HMPREF1058_RS17505 0.87 +0.6 415,063 - HMPREF1058_RS17505 0.89 -0.4 415,104 + -0.6 415,104 + -1.2 415,107 + -1.0 415,107 + +0.4 415,119 + +1.9 415,217 - -0.8 415,388 - +3.1 415,411 - +0.6 415,420 - -0.4 415,436 + +0.6 415,475 + +0.0 415,476 - +1.2 415,590 - -0.1 415,628 - -1.3 415,653 + +0.3 415,706 + +0.6 415,748 - -1.6 415,751 + -0.6 415,752 - +0.7 415,765 - -0.4 415,777 - -1.3 415,777 - -1.0 415,780 + -0.5 415,780 + +0.2 415,781 - -2.0 415,830 - +1.1 415,878 + HMPREF1058_RS17500 0.11 -1.0 415,878 + HMPREF1058_RS17500 0.11 -1.5 415,880 + HMPREF1058_RS17500 0.11 -0.9 415,881 - HMPREF1058_RS17500 0.11 -0.7 415,881 - HMPREF1058_RS17500 0.11 +0.3 416,031 - HMPREF1058_RS17500 0.17 +0.3 416,074 + HMPREF1058_RS17500 0.18 -1.3 416,102 + HMPREF1058_RS17500 0.19 -0.1 416,226 - HMPREF1058_RS17500 0.24 +0.3 416,396 + HMPREF1058_RS17500 0.29 +0.0 416,463 + HMPREF1058_RS17500 0.32 -1.9 416,644 - HMPREF1058_RS17500 0.38 -0.0 416,661 + HMPREF1058_RS17500 0.39 -1.0 416,661 + HMPREF1058_RS17500 0.39 +0.9 416,661 + HMPREF1058_RS17500 0.39 -0.9 416,662 - HMPREF1058_RS17500 0.39 -0.7 416,662 - HMPREF1058_RS17500 0.39 -0.5 416,774 + HMPREF1058_RS17500 0.43 +0.4 416,775 - HMPREF1058_RS17500 0.43 +1.4 416,943 - HMPREF1058_RS17500 0.49 +0.5 416,968 + HMPREF1058_RS17500 0.50 -0.2 416,998 - HMPREF1058_RS17500 0.51 +0.6 417,020 + HMPREF1058_RS17500 0.51 +0.2 417,020 + HMPREF1058_RS17500 0.51 +0.2 417,114 - HMPREF1058_RS17500 0.55 -1.0 417,181 - HMPREF1058_RS17500 0.57 +0.3 417,193 + HMPREF1058_RS17500 0.58 -2.7 417,281 + HMPREF1058_RS17500 0.61 -0.5 417,376 + HMPREF1058_RS17500 0.64 -1.1 417,377 - HMPREF1058_RS17500 0.64 +0.4 417,408 + HMPREF1058_RS17500 0.65 +0.1 417,477 - HMPREF1058_RS17500 0.68 +0.8 417,555 + HMPREF1058_RS17500 0.70 +0.4 417,581 + HMPREF1058_RS17500 0.71 -0.7 417,715 - HMPREF1058_RS17500 0.76 +0.6 417,719 - HMPREF1058_RS17500 0.76 +0.1 417,719 - HMPREF1058_RS17500 0.76 -0.4 417,787 + HMPREF1058_RS17500 0.78 +1.5 417,976 - HMPREF1058_RS17500 0.85 -0.2 417,981 + HMPREF1058_RS17500 0.85 -1.3 418,030 + HMPREF1058_RS17500 0.87 +0.1 418,120 - -1.1 418,120 - +0.3 418,142 - +1.3 418,187 + +0.2 418,188 - -0.6 418,188 - +0.6 418,204 + -1.7 418,282 + -0.6 418,282 + -1.3 418,283 - +1.6 418,283 - +0.5 418,283 - -0.4 418,375 + +0.3 418,420 + -1.9 418,462 - +0.4 418,659 + +0.3 418,660 - -0.6 418,660 - +0.5 418,672 - -1.8 418,673 + -0.2 418,706 - -1.2 418,738 - -0.2 418,806 - HMPREF1058_RS17495 0.10 -3.1 418,833 + HMPREF1058_RS17495 0.11 +0.3 418,837 + HMPREF1058_RS17495 0.11 +0.3 418,838 - HMPREF1058_RS17495 0.11 +0.8 418,921 + HMPREF1058_RS17495 0.14 +0.1 418,973 + HMPREF1058_RS17495 0.15 +0.9 418,974 - HMPREF1058_RS17495 0.15 +0.3 418,974 - HMPREF1058_RS17495 0.15 -0.6 419,006 + HMPREF1058_RS17495 0.16 +1.8 419,006 + HMPREF1058_RS17495 0.16 +0.8 419,013 + HMPREF1058_RS17495 0.17 -0.6 419,014 - HMPREF1058_RS17495 0.17 -0.8 419,014 - HMPREF1058_RS17495 0.17 -1.5 419,116 - HMPREF1058_RS17495 0.20 -1.1 419,116 - HMPREF1058_RS17495 0.20 +0.2 419,119 + HMPREF1058_RS17495 0.20 -0.2 419,125 + HMPREF1058_RS17495 0.20 +3.1 419,188 - HMPREF1058_RS17495 0.22 -0.5 419,222 + HMPREF1058_RS17495 0.23 -0.4 419,278 + HMPREF1058_RS17495 0.25 +2.9 419,279 - HMPREF1058_RS17495 0.25 -0.4 419,375 - HMPREF1058_RS17495 0.28 +0.1 419,378 - HMPREF1058_RS17495 0.28 -2.0 419,379 + HMPREF1058_RS17495 0.28 +0.2 419,379 + HMPREF1058_RS17495 0.28 -0.6 419,379 + HMPREF1058_RS17495 0.28 -1.3 419,380 - HMPREF1058_RS17495 0.28 +0.1 419,380 - HMPREF1058_RS17495 0.28 +1.0
Or see this region's nucleotide sequence