Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16845

Experiment: FSL 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16850 and HMPREF1058_RS16845 are separated by 105 nucleotidesHMPREF1058_RS16845 and HMPREF1058_RS16840 are separated by 630 nucleotides HMPREF1058_RS16850: HMPREF1058_RS16850 - HlyC/CorC family transporter, at 578,767 to 580,026 _RS16850 HMPREF1058_RS16845: HMPREF1058_RS16845 - SurA N-terminal domain-containing protein, at 580,132 to 582,264 _RS16845 HMPREF1058_RS16840: HMPREF1058_RS16840 - energy transducer TonB, at 582,895 to 583,980 _RS16840 Position (kb) 580 581 582 583Strain fitness (log2 ratio) -2 -1 0 1 2 3at 579.222 kb on + strand, within HMPREF1058_RS16850at 579.224 kb on + strand, within HMPREF1058_RS16850at 579.227 kb on + strand, within HMPREF1058_RS16850at 579.232 kb on + strandat 579.233 kb on - strand, within HMPREF1058_RS16850at 579.317 kb on + strand, within HMPREF1058_RS16850at 579.318 kb on - strand, within HMPREF1058_RS16850at 579.408 kb on + strand, within HMPREF1058_RS16850at 579.409 kb on - strand, within HMPREF1058_RS16850at 579.456 kb on - strand, within HMPREF1058_RS16850at 579.465 kb on - strand, within HMPREF1058_RS16850at 579.508 kb on + strand, within HMPREF1058_RS16850at 579.509 kb on - strand, within HMPREF1058_RS16850at 579.533 kb on + strand, within HMPREF1058_RS16850at 579.534 kb on - strand, within HMPREF1058_RS16850at 579.534 kb on - strand, within HMPREF1058_RS16850at 579.538 kb on + strand, within HMPREF1058_RS16850at 579.538 kb on + strand, within HMPREF1058_RS16850at 579.539 kb on - strand, within HMPREF1058_RS16850at 579.540 kb on + strand, within HMPREF1058_RS16850at 579.674 kb on + strand, within HMPREF1058_RS16850at 579.675 kb on - strand, within HMPREF1058_RS16850at 579.675 kb on - strand, within HMPREF1058_RS16850at 579.696 kb on + strand, within HMPREF1058_RS16850at 579.775 kb on + strand, within HMPREF1058_RS16850at 579.780 kb on - strand, within HMPREF1058_RS16850at 579.805 kb on + strand, within HMPREF1058_RS16850at 579.805 kb on + strand, within HMPREF1058_RS16850at 579.806 kb on - strand, within HMPREF1058_RS16850at 579.880 kb on + strand, within HMPREF1058_RS16850at 580.004 kb on + strandat 580.048 kb on + strandat 580.049 kb on - strandat 580.071 kb on + strandat 580.409 kb on + strand, within HMPREF1058_RS16845at 580.421 kb on + strand, within HMPREF1058_RS16845at 580.558 kb on - strand, within HMPREF1058_RS16845at 580.628 kb on - strand, within HMPREF1058_RS16845at 580.628 kb on - strand, within HMPREF1058_RS16845at 580.861 kb on + strand, within HMPREF1058_RS16845at 580.862 kb on - strand, within HMPREF1058_RS16845at 580.915 kb on + strand, within HMPREF1058_RS16845at 580.926 kb on - strand, within HMPREF1058_RS16845at 580.926 kb on - strand, within HMPREF1058_RS16845at 581.080 kb on + strand, within HMPREF1058_RS16845at 581.093 kb on + strand, within HMPREF1058_RS16845at 581.094 kb on - strand, within HMPREF1058_RS16845at 581.131 kb on + strand, within HMPREF1058_RS16845at 581.141 kb on - strand, within HMPREF1058_RS16845at 581.143 kb on + strand, within HMPREF1058_RS16845at 581.166 kb on + strand, within HMPREF1058_RS16845at 581.231 kb on + strand, within HMPREF1058_RS16845at 581.234 kb on - strand, within HMPREF1058_RS16845at 581.369 kb on - strand, within HMPREF1058_RS16845at 581.385 kb on - strand, within HMPREF1058_RS16845at 581.405 kb on - strand, within HMPREF1058_RS16845at 581.512 kb on + strand, within HMPREF1058_RS16845at 581.514 kb on + strand, within HMPREF1058_RS16845at 581.572 kb on + strand, within HMPREF1058_RS16845at 581.839 kb on - strand, within HMPREF1058_RS16845at 581.903 kb on + strand, within HMPREF1058_RS16845at 581.903 kb on + strand, within HMPREF1058_RS16845at 581.980 kb on - strand, within HMPREF1058_RS16845at 582.002 kb on - strand, within HMPREF1058_RS16845at 582.035 kb on + strand, within HMPREF1058_RS16845at 582.043 kb on + strand, within HMPREF1058_RS16845at 582.071 kb on + strandat 582.103 kb on + strandat 582.120 kb on + strandat 582.177 kb on + strandat 582.199 kb on - strandat 582.256 kb on + strandat 582.269 kb on + strandat 582.272 kb on + strandat 582.273 kb on - strandat 582.274 kb on + strandat 582.274 kb on + strandat 582.276 kb on + strandat 582.276 kb on + strandat 582.283 kb on - strandat 582.284 kb on + strandat 582.395 kb on - strandat 582.503 kb on + strandat 582.505 kb on + strandat 582.505 kb on + strandat 582.505 kb on + strandat 582.512 kb on + strandat 582.517 kb on + strandat 582.518 kb on - strandat 582.565 kb on + strandat 582.575 kb on - strandat 582.639 kb on - strandat 582.639 kb on - strandat 582.640 kb on + strandat 582.660 kb on + strandat 582.697 kb on - strandat 582.726 kb on - strandat 582.830 kb on - strandat 582.879 kb on + strandat 582.886 kb on - strandat 582.886 kb on - strandat 582.887 kb on + strandat 582.887 kb on + strandat 582.888 kb on - strandat 582.888 kb on - strandat 582.888 kb on - strandat 582.888 kb on - strandat 582.889 kb on + strandat 582.889 kb on + strandat 582.892 kb on - strandat 582.935 kb on + strandat 582.968 kb on + strandat 582.998 kb on - strandat 583.079 kb on - strand, within HMPREF1058_RS16840at 583.079 kb on - strand, within HMPREF1058_RS16840at 583.079 kb on - strand, within HMPREF1058_RS16840at 583.079 kb on - strand, within HMPREF1058_RS16840at 583.162 kb on - strand, within HMPREF1058_RS16840at 583.206 kb on + strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.256 kb on + strand, within HMPREF1058_RS16840at 583.261 kb on + strand, within HMPREF1058_RS16840

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Per-strain Table

Position Strand Gene LocusTag Fraction FSL 10 mg/mL (C)
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579,222 + HMPREF1058_RS16850 0.36 -0.1
579,224 + HMPREF1058_RS16850 0.36 +1.5
579,227 + HMPREF1058_RS16850 0.37 -1.4
579,232 + -0.4
579,233 - HMPREF1058_RS16850 0.37 -2.4
579,317 + HMPREF1058_RS16850 0.44 +0.1
579,318 - HMPREF1058_RS16850 0.44 +0.2
579,408 + HMPREF1058_RS16850 0.51 -0.1
579,409 - HMPREF1058_RS16850 0.51 -1.1
579,456 - HMPREF1058_RS16850 0.55 -0.1
579,465 - HMPREF1058_RS16850 0.55 +0.4
579,508 + HMPREF1058_RS16850 0.59 -0.6
579,509 - HMPREF1058_RS16850 0.59 +2.8
579,533 + HMPREF1058_RS16850 0.61 +1.5
579,534 - HMPREF1058_RS16850 0.61 +0.7
579,534 - HMPREF1058_RS16850 0.61 +1.1
579,538 + HMPREF1058_RS16850 0.61 -2.2
579,538 + HMPREF1058_RS16850 0.61 +1.0
579,539 - HMPREF1058_RS16850 0.61 +0.3
579,540 + HMPREF1058_RS16850 0.61 -0.7
579,674 + HMPREF1058_RS16850 0.72 -1.7
579,675 - HMPREF1058_RS16850 0.72 +0.5
579,675 - HMPREF1058_RS16850 0.72 +0.7
579,696 + HMPREF1058_RS16850 0.74 +1.2
579,775 + HMPREF1058_RS16850 0.80 +0.4
579,780 - HMPREF1058_RS16850 0.80 +0.0
579,805 + HMPREF1058_RS16850 0.82 +2.1
579,805 + HMPREF1058_RS16850 0.82 +0.9
579,806 - HMPREF1058_RS16850 0.82 -0.4
579,880 + HMPREF1058_RS16850 0.88 +0.3
580,004 + +0.6
580,048 + -0.7
580,049 - +0.8
580,071 + -1.8
580,409 + HMPREF1058_RS16845 0.13 -0.7
580,421 + HMPREF1058_RS16845 0.14 +2.1
580,558 - HMPREF1058_RS16845 0.20 +0.3
580,628 - HMPREF1058_RS16845 0.23 +0.5
580,628 - HMPREF1058_RS16845 0.23 -1.2
580,861 + HMPREF1058_RS16845 0.34 -1.1
580,862 - HMPREF1058_RS16845 0.34 +2.1
580,915 + HMPREF1058_RS16845 0.37 +0.3
580,926 - HMPREF1058_RS16845 0.37 -1.0
580,926 - HMPREF1058_RS16845 0.37 -1.3
581,080 + HMPREF1058_RS16845 0.44 -2.6
581,093 + HMPREF1058_RS16845 0.45 +0.1
581,094 - HMPREF1058_RS16845 0.45 +3.1
581,131 + HMPREF1058_RS16845 0.47 -0.2
581,141 - HMPREF1058_RS16845 0.47 -0.4
581,143 + HMPREF1058_RS16845 0.47 +0.3
581,166 + HMPREF1058_RS16845 0.48 +0.3
581,231 + HMPREF1058_RS16845 0.52 -0.9
581,234 - HMPREF1058_RS16845 0.52 -0.5
581,369 - HMPREF1058_RS16845 0.58 +0.5
581,385 - HMPREF1058_RS16845 0.59 +0.4
581,405 - HMPREF1058_RS16845 0.60 -0.1
581,512 + HMPREF1058_RS16845 0.65 -0.9
581,514 + HMPREF1058_RS16845 0.65 +1.2
581,572 + HMPREF1058_RS16845 0.68 +1.3
581,839 - HMPREF1058_RS16845 0.80 +0.1
581,903 + HMPREF1058_RS16845 0.83 +0.5
581,903 + HMPREF1058_RS16845 0.83 +0.3
581,980 - HMPREF1058_RS16845 0.87 -0.4
582,002 - HMPREF1058_RS16845 0.88 +0.8
582,035 + HMPREF1058_RS16845 0.89 +0.3
582,043 + HMPREF1058_RS16845 0.90 -0.5
582,071 + -1.2
582,103 + -1.5
582,120 + -0.4
582,177 + -0.6
582,199 - +0.3
582,256 + +0.6
582,269 + -2.4
582,272 + +0.2
582,273 - -0.5
582,274 + +0.4
582,274 + +1.0
582,276 + +0.2
582,276 + +0.8
582,283 - -0.1
582,284 + +0.8
582,395 - -1.5
582,503 + +0.9
582,505 + -0.3
582,505 + +0.8
582,505 + +0.1
582,512 + +0.3
582,517 + +0.0
582,518 - +1.0
582,565 + +3.1
582,575 - +1.5
582,639 - -0.1
582,639 - -1.2
582,640 + +0.1
582,660 + +0.1
582,697 - -0.4
582,726 - +0.1
582,830 - -0.4
582,879 + +0.2
582,886 - +0.3
582,886 - -1.1
582,887 + +0.4
582,887 + -1.7
582,888 - +0.4
582,888 - -0.2
582,888 - +0.9
582,888 - -0.3
582,889 + +0.7
582,889 + +1.1
582,892 - -0.1
582,935 + +1.0
582,968 + -0.0
582,998 - +0.4
583,079 - HMPREF1058_RS16840 0.17 +0.9
583,079 - HMPREF1058_RS16840 0.17 +0.2
583,079 - HMPREF1058_RS16840 0.17 -2.0
583,079 - HMPREF1058_RS16840 0.17 -0.2
583,162 - HMPREF1058_RS16840 0.25 +0.0
583,206 + HMPREF1058_RS16840 0.29 -0.7
583,207 - HMPREF1058_RS16840 0.29 +0.8
583,207 - HMPREF1058_RS16840 0.29 -1.5
583,207 - HMPREF1058_RS16840 0.29 +0.0
583,256 + HMPREF1058_RS16840 0.33 -0.5
583,261 + HMPREF1058_RS16840 0.34 +0.4

Or see this region's nucleotide sequence